Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6 174 1e-37 seq23 172 4e-37 seq15 125 6e-23 seq8 109 4e-18 seq3 87.8 1e-11 seq17 86.0 5e-11 seq12 86.0 5e-11 >seq6 Length=122646612 Score = 174 bits (192), Expect = 1e-37 Identities = 365/537 (68%), Gaps = 8/537 (1%) Strand=Plus/Plus Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTT-TCTTT 550107 || || ||||| |||||||||||||| || | | |||| || ||| ||||| ||||| Sbjct 89910546 AAGGTGGAAATAATTGCCAATGATCAGGGGA-CTGAACCACCCCAAGCTATGTCATCTTT 89910604 Query 550108 CACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTAC 550167 || | || || || |||||||||| ||||| | |||| | | ||||| || Sbjct 89910605 -ACTAACACCAGACGATTGATTGGTGATGCTGCAAAGAACCAAGTCRCAATGAATCCCAC 89910663 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 ||| || |||||||||| |||| | | |||| |||| ||| ||||| | ||| || Sbjct 89910664 CAACACGGTTTTTGATGCCAAACAACTTACTGGATGAAGATTTGATGATGCTGTTGTCCA 89910723 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 | | | |||||| |||||||| ||| | | |||| | |||| | |||| | || | Sbjct 89910724 GTCTGTTATGAAACATTGGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTAAGGTTTA 89910783 Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTT 550346 || | | ||| | ||| | |||| | ||||| | || ||||| ||||| Sbjct 89910784 AGTAGAATACAARGGAGA-GACAAAGAGTTTTTATCCAGAGGAGATGTCATCCATGGTCC 89910842 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTA 550405 | | || | |||| ||| || | | |||| |||| ||||| | | || Sbjct 89910843 TGAA-AAGAGGAAAGAAATTGCAGAAGTCTGCCTTGGG-AAGACTGTTACCAAYRCTGTT 89910900 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | || ||||| || || ||||||||||| || ||||| ||||| ||||||||| || | Sbjct 89910901 GTCACAGTACCTGCCTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTAGAACT 89910960 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||||| || ||| ||| | || |||| |||||| ||||||||||| |||| ||| Sbjct 89910961 ATTGCTGGTCTCCGTGTACTTAGAATCATCAGTGAACCAACTGCTGCTGCTATTGCCTAT 89911020 Query 550526 GGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 || | || ||| | || ||| ||||| || |||||||||| || ||| Sbjct 89911021 GGCTTAGACAAAAAKGTTGGAGCAGAGAGAAATGTGCTGATCTTTGATTTAGGTGGT 89911077 >seq23 Length=53331160 Score = 172 bits (190), Expect = 4e-37 Identities = 377/555 (68%), Gaps = 16/555 (3%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| || || || | || ||||| || ||||| || || | ||| | || || Sbjct 27283371 AGCTATCGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAACACGGCAA 27283430 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || || ||||| || || || ||| | || || || || || | ||||| Sbjct 27283431 GGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCCTTCAC 27283490 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167 || ||||| | | | || |||||||| || | || ||||| || ||||| Sbjct 27283491 TGATACTGAGCGGCTCATCGGCGATGCAGCCAAGAACCAGGTAGCCA-TG--AATCCCCA 27283547 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 || ||| | |||||||| |||||| | || || |||| ||||||||| | || || Sbjct 27283548 GAACACTGTCTTTGATGCCAAACGTCTGATAGGCAGAAAATTTAATGATCCTGTCGTGCA 27283607 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATT 550285 |||||||||| | ||||||||||||| | | |||| || || || | || | Sbjct 27283608 ATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAAT 27283667 Query 550286 GAAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGG 550343 | | |||| | | ||| | ||| |||| || ||| |||| || ||||||| Sbjct 27283668 GGTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAAGAAATCTCTTCTATGG 27283723 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCA 550402 | ||| || ||||| | || || |||||| |||| | | | || || |||| Sbjct 27283724 TACTAACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACCAATGCT 27283782 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || || ||||| ||||| || || |||||||| ||||| || || || || ||||| || Sbjct 27283783 GTGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCGGGT 27283842 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 ||| || || || ||||| || | |||||||||||||| ||||||||||| |||| Sbjct 27283843 GTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCATTGCC 27283902 Query 550523 TATGGACTTGATAAA 550537 ||||| | |||||| Sbjct 27283903 TATGGCTTAGATAAA 27283917 >seq15 Length=84800079 Score = 125 bits (138), Expect = 6e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || ||||| || |||||||||||||| || ||||| ||||| Sbjct 32468234 GTTACCAACGCTGTCGTCACAGTACCTGCCTATTTTAATGACTCTCAGCGTCAGGCTACC 32468175 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || || || ||||| || |||||||| || |||||| Sbjct 32468174 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCT 32468115 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 32468114 GCTGCTATTGCCTATGG 32468098 Score = 102 bits (112), Expect = 7e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| |||||| ||||| | || | || || || ||| Sbjct 32469068 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCACGGAAAGGTGGAA 32469009 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||| | || || || || Sbjct 32469008 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACC 32468949 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| ||| | |||||||||||||| | |||| | | ||||| ||||| || || Sbjct 32468948 GAACGGTTAATCGGTGATGCAGCAAAGAACCAAGTCGCAATGAATCCCACCAACACGGTT 32468889 Query 550178 TTTG 550181 |||| Sbjct 32468888 TTTG 32468885 >seq8 Length=116941312 Score = 109 bits (120), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 || |||||||| ||| || || || ||||| |||| | ||| | | |||||| Sbjct 110779560 ACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATCTTCC 110779501 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 ||||| || || ||||| || ||||||||||| ||||||||||||||||| ||||| || Sbjct 110779500 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 110779441 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTA 563445 || || ||||| || | |||||| | | | | |||||||| | || || Sbjct 110779440 ATCTTGGCYTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTC 110779381 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || |||||||| ||||| Sbjct 110779380 CCCGTCAGGGTCTTCACGAAAATCTGCAT 110779352 >seq3 Length=127865068 Score = 87.8 bits (96), Expect = 1e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | ||||| Sbjct 21608349 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTATGTCCATCTT 21608292 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 ||||| || || ||||| || ||||||||||| ||||||||||||| ||| |||| | Sbjct 21608291 TGAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCCTTATTCT 21608232 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || |||||||| | | | |||||||| | | | Sbjct 21608231 GGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTGATGATGT 21608172 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | ||||| || |||||||| ||||| Sbjct 21608171 TCCCTATCAGAGTCTTCACGAAAATCTGCAT 21608141 >seq17 Length=76519027 Score = 86.0 bits (94), Expect = 5e-11 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||| ||||| || || || || || ||| | ||| || ||||| |||| || | Sbjct 53719113 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGG--ATGTTGTAGTCAGACAGGG 53719056 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || ||||| |||||||| || || || ||||| || || || || | Sbjct 53719055 TGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGC 53718996 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCG 563430 ||||||| ||||| || || || || ||| || || ||| || | | || || Sbjct 53718995 CTTCTTTTTCTTGTATCTTCCCCTTGACRTTCTCGATGGTGTCACTGGGC-TCCACCTCC 53718937 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | ||||||||||| || || || || || || ||||| Sbjct 53718936 AGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 53718893 >seq12 Length=85442668 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || || || || ||||| ||| | | ||| || |||||||||| ||| Sbjct 3919874 CCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGG--ATGTTGTAATCAGAAAGA 3919931 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || |||||||| || || | ||||| ||||||||||| Sbjct 3919932 GTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCTTCTGCTGGTCAGGAGGAATG 3919991 Query 563371 CCTTCTTTATCTTGAATTTT 563390 ||||| ||||| || || || Sbjct 3919992 CCTTCCTTATCCTGGATCTT 3920011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294307695680