Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11 100 5e-16 seq14 89.7 1e-12 >seq11 Length=110256634 Score = 100 bits (110), Expect = 5e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||||||||||||||| ||||| |||||||| || |||||| |||||| | || |||| Sbjct 90332928 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCT 90332869 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | |||| ||||| || || |||||||| || || || ||||| Sbjct 90332868 GGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 90332810 Query 26002 GACGAGG 26008 ||||||| Sbjct 90332809 GACGAGG 90332803 >seq14 Length=81409030 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||| || |||| |||||||| ||||| || || || || ||| || || ||||| Sbjct 60398582 GGGGAGAGGGTGGTGGCCTTTGCCGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 60398641 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 || || |||||||| ||| | ||| |||| |||||| || || |||||||| ||||| Sbjct 60398642 GCTATATTCTGGCTAAAGAA-AAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCT 60398700 Query 25992 CATCAGCAGGGACGA 26006 ||||||| | || || Sbjct 60398701 CATCAGCMGAGATGA 60398715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844428462080