Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6 132 3e-25 seq15 96.9 2e-14 seq8 93.3 3e-13 >seq6 Length=122646612 Score = 132 bits (146), Expect = 3e-25 Identities = 356/537 (66%), Gaps = 8/537 (1%) Strand=Plus/Plus Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || || ||||||||||||||||| || || | | |||| || ||| ||||| ||| Sbjct 89910546 AAGGTGGAAATAATTGCCAATGATCAGGGGACT-GAACCACCCCAAGCTATGTCATCTTT 89910604 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||| | || || | ||||| |||||||| || | |||| || ||||| Sbjct 89910605 ACTAACACCAGACGATTGATTGGTGATGCTGCAAAGAACCAAGTCRCAATGAATCCCACC 89910664 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || |||||||||| ||| | | | ||| | | ||||||||| | |||||| Sbjct 89910665 AACACGGTTTTTGATGCCAAACAACTTACTGGATGAAGATTTGATGATGCTGTTGTCCAG 89910724 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 |||| |||| |||||||| || | |||| ||||| || ||| | ||| | | || Sbjct 89910725 TCTGTTATGAAACATTGGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTAAGGTTTAA 89910784 Query 474626 GCAATACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTTTT 474684 | | | || || || || ||| | |||| | || || | || || || ||||| | Sbjct 89910785 GTAGAATACAARGGAGAGAC-AAAGAGTTTTTATCCAGAGGAGATGTCATCCATGGTCCT 89910843 Query 474685 AGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTA 474742 | || | |||| ||| || || || | ||||| |||| || || | | || Sbjct 89910844 -GAAAAGAGGAAAGAAATTGCAGAAGTC-TGCCTTGG-GAAGACTGTTACCAAYRCTGTT 89910900 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 | || || || || || |||||||| ||||| ||||| || || |||||||| ||| Sbjct 89910901 GTCACAGTACCTGCCTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTAGAACT 89910960 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| ||||| ||| | | || || | ||||||||| || || || |||| ||| Sbjct 89910961 ATTGCTGGTCTCCGTGTACTTAGAATCATCAGTGAACCAACTGCTGCTGCTATTGCCTAT 89911020 Query 474863 GGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 || | || || || || ||| |||||| | |||||||||| || ||| Sbjct 89911021 GGCTTAGACAAAAAKGTTGGAGCAGAGAGAAATGTGCTGATCTTTGATTTAGGTGGT 89911077 Score = 89.7 bits (98), Expect = 3e-12 Identities = 127/178 (71%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 475989 CCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAAT 476048 |||| || ||||| || || | ||| ||| || | | ||||||||| ||| Sbjct 89911738 CCACCTACTCTGACAACCAGCCTGGTGTTCTCATTCAGGTTTATGAAGGTGAGTGAACCA 89911797 Query 476049 TCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCA 476108 | || || ||||| ||| ||||| | ||| | || ||| || |||||||| ||| Sbjct 89911798 TGACCAAGGATAACAACTTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGC-CCCT 89911856 Query 476109 GAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGT 476166 | | ||| |||| |||||||| ||||||||||||||||| | ||| ||||| ||||| Sbjct 89911857 GTAGTGTTTCTCAGATTGAAGTCACTTTTGATATTGATGCCARTGGCATTCTCAATGT 89911914 >seq15 Length=84800079 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || || || |||||||| ||| | Sbjct 32466773 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACGGGCATACCTCCTGCCCCCCGT 32466714 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||||||||| ||||| || || |||||| || Sbjct 32466713 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATCCTCAATGTTTCT 32466654 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 32466653 GCTGTGGATAA 32466643 Score = 91.5 bits (100), Expect = 1e-12 Identities = 218/327 (67%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||| ||||||||||| |||| ||||| || || | | | |||| || Sbjct 32467773 ACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGCCAGTATTGAGATT 32467714 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||||||||| || | |||| |||||| | || ||||||||| Sbjct 32467713 GATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 32467654 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| | || | || | || || || || ||| || || ||| | Sbjct 32467653 TTGAATGCTGACTTGTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCCCTTAGGGATGCC 32467594 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||| || || | ||||| ||||| | || || || ||||| | || || Sbjct 32467593 AAACTGGACAAGTCTCAGATTCATGATATTGTCTTGGTTGGTGGCTCAACCCGTATCCCC 32467534 Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || || ||||| | || | | || || || ||| | | ||| | || | || Sbjct 32467533 AAGAT-TCAGAAACTTCTCCAGGACTTCTTCAACGGGAAAGAACTGAATAAGAGCATCAA 32467475 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||| |||||||||||||| || Sbjct 32467474 CCCTGATGAGGCTGTTGCATATGGTGC 32467448 Score = 89.7 bits (98), Expect = 3e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || ||||||||||| ||||| ||||| || || |||||||| |||| ||| Sbjct 32468216 ACAGTACCTGCCTATTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATT 32468157 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 || ||||| || || | || || || ||||| ||||| || || || |||| ||||| Sbjct 32468156 GCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCTGCTGCTATTGCCTATGG 32468098 >seq8 Length=116941312 Score = 93.3 bits (102), Expect = 3e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || | ||| || |||||||||||||||||||| Sbjct 110779507 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 110779448 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| ||| | ||||| | | | | || || || || Sbjct 110779447 ATCCTGGATCTTGGCYTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGAT 110779388 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| |||||||| || Sbjct 110779387 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTG 110779355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177827364736