Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq8 360 2e-94 seq3 244 1e-59 seq1 167 3e-36 seq9 98.7 1e-15 >seq8 Length=116941312 Score = 360 bits (398), Expect = 2e-94 Identities = 678/985 (69%), Gaps = 13/985 (1%) Strand=Plus/Minus Query 160053 AGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCG 160112 ||||| ||||||| ||| |||| ||| || | ||||| ||| ||||||||| || || Sbjct 54906426 AGATGCTCGTCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCGAATTTGTTGGCA 54906367 Query 160113 AACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACG 160172 |||| ||||| ||| | || ||||| || ||| || | ||||| ||||| || Sbjct 54906366 AACAAGTGGTGCACGTGCAACAG---CCAGTTCAAGTCACCAGCTCCGAAAACGCACACA 54906310 Query 160173 GAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCG 160232 || || | ||| |||||| |||| |||||||| | || || || | ||||| ||||| Sbjct 54906309 GAGCGAACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTCA 54906250 Query 160233 TAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA- 160291 |||||||||| || ||||||||||| ||||| |||||||| || ||||| || || || Sbjct 54906249 AAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAGACGTGTCATACTTATAG 54906190 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | ||| || | | | |||| | |||| || | ||| | |||||||| || | || Sbjct 54906189 CTTAAGGACAATGACCCTGGGA-CTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 54906131 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 ||| |||||||| ||||| || | ||| ||||| |||| | || || | | || Sbjct 54906130 GTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTATATTTTGGTTCTGGAG 54906071 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 |||| || || || | || ||||| || || ||||| || || | ||| | Sbjct 54906070 CACGTACTCCACATATTCCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTGT 54906011 Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||| ||| || |||| | || | ||| ||||| | Sbjct 54906010 TTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTCACGACTT 54905952 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | | |||| |||||||| | |||| || | |||||| || || ||||| ||| Sbjct 54905951 CATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTTTCTCTGTTTCTAGGTTGT 54905892 Query 160591 TGGCACCG-TCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 | | || || | | || |||| | |||| || || ||||| || || | ||||| Sbjct 54905891 TCTCGCCCATCAATAGCTTG-AGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 54905833 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | ||||||| ||||||||| || ||| | || |||||| | Sbjct 54905832 TCCATACCGCAGAGATTTATCAGGTACTTCCAGCCTGCATTCATCTGGTAGAGGTCCTGC 54905773 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | | Sbjct 54905772 ATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCACGCTCTCCAGCTGA 54905713 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAACA 160827 ||||| |||||||| ||| ||| || || ||| | ||| || | ||| ||| | | Sbjct 54905712 CTGGCGACAAAGACATTACTGAAGCAGGATGCGA-TGCCAACAGCTGCAGCCAAAAAGGA 54905654 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 | || || | ||| |||||||| | ||||| | ||||||||| |||||||||| Sbjct 54905653 T-TTCTCTGATTTTGCATCCACGTGAATACAATAGAAATTCTGAGGCATATAGATGGCCC 54905595 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| |||| Sbjct 54905594 TCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGAA 54905535 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 | | | ||| || ||| || | | || | || || ||| |||| || ||| || Sbjct 54905534 ATCCCGCCTCTTCTTTACTAAGTGGTTCTGTAATATATTTGCGCTTCTTAATGAAAGAAG 54905475 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 ||||||| | |||||||| || || Sbjct 54905474 CACAATCACCAGTCATGTTTATGTA 54905450 >seq3 Length=127865068 Score = 244 bits (270), Expect = 1e-59 Identities = 411/589 (70%), Gaps = 12/589 (2%) Strand=Plus/Plus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || Sbjct 39198022 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 39198077 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || |||| || ||||| | || | ||||| || ||| ||| |||||||| Sbjct 39198078 CCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCATT 39198137 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | ||| | | || ||||||||||||||||| || ||||||||| | || Sbjct 39198138 GGGGTGTGACACGATCTCAGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAGAT 39198197 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTAAGCCATTGGTAAAAGACTC 168121 | ||| || || || || | |||||||| || ||||||| | || | | | | | Sbjct 39198198 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCT-TCAGATAGTT 39198256 Query 168122 GAT-GTGAAGCGATACGGTAGGTGGGACGTATAGAGTCAAGCACGTTTTTCCAGAAATCT 168180 || |||||| |||| || || | | ||||| | ||| | | |||| || |||| Sbjct 39198257 TATAGTGAAGGAATACTGTGGG-----CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCT 39198311 Query 168181 TGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTCCACGGTGGTAT 168240 | || || || || || || ||||||||| || | || | || || |||| |||||||| Sbjct 39198312 TTCCAGAACCAAAGGTATTAAAGAGGCACTTGTAACACGCCTCATCTTCCAAGGTGGTAT 39198371 Query 168241 TCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCACACGATCTTTAT 168300 |||| || || | |||||||| ||| |||| ||| || ||||| | || || | Sbjct 39198372 TCCAGAAGGTAATGGTTGAGTTCATGAGTCCCAGCTGGGTGATGTTTATCTTGTCCTTGT 39198431 Query 168301 AAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTTCTCCGGGCTGG 168360 | | ||| || |||||||| || ||||||| |||| ||||| |||||| || ||||| Sbjct 39198432 AGGCAGGCTGGACTACAACCCCATGGTTCTTGCTGTAGGTGATCATGTTTTCTGGGCTTA 39198491 Query 168361 TGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTGCAGGGAACATC 168420 ||||| || || ||||| || || |||| ||| || | | | ||| || |||| Sbjct 39198492 CAGCCTTGATTTTTTGCCATGTCACAATCAAAACTTCCTGGGGATTTTTCAGAGAGCATC 39198551 Query 168421 TCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469 | | ||||| || ||||||||||| ||| |||| || || || || Sbjct 39198552 TTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTTACATCCTGGGTCACCAC 39198600 >seq1 Length=161108492 Score = 167 bits (184), Expect = 3e-36 Identities = 227/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 57810434 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 57810493 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || || |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 57810494 TAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 57810553 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || || || | ||| || |||||||| |||||||||||| Sbjct 57810554 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCGTGGTTCTCG 57810613 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 57810614 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 57810673 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | | ||| || ||||| | ||||| || ||||||||||| ||| Sbjct 57810674 ACTTCCTGGGGATTTTTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 57810733 Query 168453 TCATCTTGAGTTACGAC 168469 |||| || || || || Sbjct 57810734 ACATCCTGGGTCACCAC 57810750 Score = 114 bits (126), Expect = 1e-20 Identities = 160/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || Sbjct 57807767 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 57807822 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || |||| || ||||| | || | ||||| || ||| ||| |||||||| Sbjct 57807823 CCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCATT 57807882 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | ||| | | || ||||||||||||||||| || ||||||||| | || Sbjct 57807883 GGGGTGTGACACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAGAT 57807942 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | |||||||| || ||||||| Sbjct 57807943 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 57807983 >seq9 Length=108100205 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| || Sbjct 56113295 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 56113354 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 56113355 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 56113414 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 56113415 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 56113474 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 56113475 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 56113534 Query 176422 TACA 176425 | || Sbjct 56113535 TGCA 56113538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577218969112320