Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq8 109 1e-18 seq17 95.1 2e-14 seq3 84.2 4e-11 seq1 84.2 4e-11 >seq8 Length=116941312 Score = 109 bits (120), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192311 CACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATA 192370 |||| | ||| | || |||| ||| | ||||| ||| || || || || ||||| | Sbjct 110779577 CACCACGAAGTCTCAACACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACA 110779518 Query 192371 ATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTA 192430 | || | | |||| |||| ||| || ||||||||||| | ||| || || ||||| || | Sbjct 110779517 AAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAA 110779458 Query 192431 TTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTT 192490 ||||||| ||||| || || || |||||||| || | ||| || | || || | Sbjct 110779457 TTCCTTCCTTATCCTGGATCTTGGCYTTTACATTTTCTACTGTATCCGAGGGCTCAACCT 110779398 Query 192491 CTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | ||||| ||||| || || || | || || | || |||||||| || Sbjct 110779397 CGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 110779349 >seq17 Length=76519027 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | ||| || ||| || || ||| Sbjct 53719122 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 53719063 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||||| || |||||||| | ||||| || || || Sbjct 53719062 GACAGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGG 53719003 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| |||||||| || || || || || | || | || Sbjct 53719002 GGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACRTTCTCGATGGTGTCACTGGGCTCC 53718943 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| |||||||||||||| | || || | ||| ||||||||| Sbjct 53718942 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATT 53718892 >seq3 Length=127865068 Score = 84.2 bits (92), Expect = 4e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 |||| ||| | ||| | ||| ||| || || || || ||||| || || || |||| | Sbjct 21608349 ACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTATGTCCATCTTT 21608291 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 | ||| || ||||||||||| | ||| || || ||||| || |||| ||| |||| || Sbjct 21608290 GAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCCTTATTCTG 21608231 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || || |||||||| ||| | |||||| | || || || ||||| ||| | || Sbjct 21608230 GATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTGATGATGTT 21608171 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || | | || || | || |||||||| || Sbjct 21608170 CCCTATCAGAGTCTTCACGAAAATCTGCATCTT 21608138 >seq1 Length=161108492 Score = 84.2 bits (92), Expect = 4e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || | | |||| |||| ||| || ||||||||||| | ||| || || ||| Sbjct 47266950 TCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCA 47267009 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || || |||||||| | | | ||| || | Sbjct 47267010 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGC 47267069 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | | ||| ||||| || | || | || || || || |||||||| || Sbjct 47267070 TCCACCTTGACAGTGATGGTCTTCACTGTCAGRGTCTTCATGAAAATCTGCATCTT 47267125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479596363200