Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq17 122 7e-23 seq19 95.1 9e-15 seq3 82.4 6e-11 >seq17 Length=76519027 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| || ||||| ||||| || || ||||| ||||| || ||||| || || | Sbjct 53720943 CCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 53720884 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || ||| | |||| || ||||| || || || Sbjct 53720883 AGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53720824 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || ||||| | || | |||||| | || || Sbjct 53720823 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 53720764 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || ||||| || || || |||||||| Sbjct 53720763 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53720717 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| ||||| || ||||| || || | | |||||| | Sbjct 53720019 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 53719960 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 53719959 TCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 53719900 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || ||||| || Sbjct 53719899 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 53719840 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 53719839 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53719805 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| ||||| || ||||| || || | | |||||| | Sbjct 53720703 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 53720644 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 53720643 TCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 53720584 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || ||||| || Sbjct 53720583 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 53720524 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 53720523 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53720489 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| ||||| || ||||| || || | | |||||| | Sbjct 53719335 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 53719276 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 53719275 TCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 53719216 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 53719215 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 53719156 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 53719155 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53719121 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| ||||| || ||||| || || | | |||||| | Sbjct 53719563 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 53719504 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 53719503 TCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 53719444 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 53719443 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 53719384 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 53719383 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53719349 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| ||||| || ||||| || || | | |||||| | Sbjct 53719791 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 53719732 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 53719731 TCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 53719672 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 53719671 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 53719612 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 53719611 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53719577 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| ||||| || ||||| || || | | |||||| | Sbjct 53720475 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 53720416 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 53720415 TCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 53720356 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 53720355 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 53720296 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 53720295 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53720261 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| || || || ||||| || || | | |||||| | Sbjct 53720247 CGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 53720188 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 53720187 TCTTCCAGCTGTTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 53720128 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 53720127 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 53720068 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 53720067 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53720033 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||| || |||| || || || || ||||| || ||||| ||||| | Sbjct 55474418 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAAAA 55474359 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || ||||| ||| | || | || ||||| || || ||| Sbjct 55474358 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 55474299 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || || | || | |||||| | || || Sbjct 55474298 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 55474239 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | |||||| || || ||||||||||| Sbjct 55474238 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 55474189 >seq19 Length=65317831 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||| || |||| || || || || ||||| || ||||| ||||| | | Sbjct 34141179 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 34141238 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | || | || ||||| || || ||| Sbjct 34141239 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 34141298 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || || | || | |||||| | || || Sbjct 34141299 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 34141358 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | |||||| || || ||||||||||| Sbjct 34141359 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 34141408 >seq3 Length=127865068 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 ||| | |||||| ||||| || ||||||||||| || || | | || | ||| | Sbjct 21608350 CACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTT 21608291 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 |||||| ||||||||| | |||| ||||||||| || || ||||| | || || | || Sbjct 21608290 GAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCCTTATTCTG 21608231 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 | || || ||| |||||| || || || | || || || ||||| || | || Sbjct 21608230 GATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTGATGATGTT 21608171 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | | || || || || |||||||| || Sbjct 21608170 CCCTATCAGAGTCTTCACGAAAATCTGCATCTT 21608138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219049764512