Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq14 134 1e-26 >seq14 Length=81409030 Score = 134 bits (148), Expect = 1e-26 Identities = 702/1114 (63%), Gaps = 62/1114 (6%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || | | | ||| || ||| |||| | |||||| | || | Sbjct 72237272 ATGCCTTCTATGTTGCGGACCTGGAATACATTCTGAAGAAACATCTGAGATGGTTGAAAG 72237331 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | | || | || | || | Sbjct 72237332 CTCTTCCTCTGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGA-ACCGTAGTG 72237390 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||| || |||||| || || || |||||||||| ||| ||| || || || || Sbjct 72237391 AAGACACTCGCTGCCATTGGGACAGGATTTGACTGTGTCAGCAAGACTGAAATACAATTG 72237450 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | ||| || || | | |||| | ||| | | ||| ||||| ||||| || Sbjct 72237451 GTGCAGAGTCTCGGGGTGCCCCCAGAGAAGATTATCTATGCAAATCCATGTAAACAAGTG 72237510 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | | |||| | ||||||||||||||||||||| Sbjct 72237511 TCTCAGATTAAGTATGCTGCCAATAACAGAGTCCAGATGATGACTTTTGATAGTGAAGTT 72237570 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||||| | ||| ||| | || | | || ||| |||| || |||| | Sbjct 72237571 GAGCTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCGGATCACCACT 72237630 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | | ||||| || ||||| || || | || | Sbjct 72237631 GATGATTCCAAAGCAGTCTGTCGCTTCAGTGTTAAATTTGGTGCCACTCTCAAAAAAAAA 72237690 Query 20624 CAA--------------CG-CCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATC 20668 || || ||| | ||| ||| ||| | |||| | || || || Sbjct 72237691 AAAAAAAAAAGCTCTTTCGCCCTTTTGGAACGGGCGAAAGAGCTAGGTATTGATGTCATT 72237750 Query 20669 GGAGTCAGCTTCCACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATA 20728 || ||||||||||||||||| |||||||| | ||| | || | | | ||||| Sbjct 72237751 GGTGTCAGCTTCCACGTGGGAAGTGGCTGTACTGATCCTGAGACCTTTGTGCAGGCCATC 72237810 Query 20729 GCTGAGGCCAGGAGAGCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCT 20786 |||| ||| | | | |||||| | || |||||| | || || ||||||| || Sbjct 72237811 TCTGATGCCCGCTGTGTCTTTGACATGGG--CGCTGAGGTTGGTTTCAACATGTATCTGC 72237868 Query 20787 TGGATATTGGTGGCGGCTTTCCCGGGATCAATGAGATTGAGCCAACTTTTGAGGACATTG 20846 | || |||||||| |||||||| || | | || | ||| | ||||| || || Sbjct 72237869 TTGAAATTGGTGGTGGCTTTCCTGGATCCGAGGATGTAAAGCTTAAATTTGAAGAGATCA 72237928 Query 20847 CAGAAGTCATTAACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTA 20906 | | || || ||| | || |||| | | |||||||| || | || ||| | Sbjct 72237929 CCAATGTAATCAACCCAGCACTGGACAAGTATTTTCCATCAGACTCTGGAGCGAGAATCA 72237988 Query 20907 TTGGTGAACCTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTG 20966 | | ||| |||||||| ||||| | | | || || | || | || || | | | |||| Sbjct 72237989 TAGCTGAGCCTGGCAGATACTATGTTGCATCAGCTTTCACGCTCGCAGTTAATATCATTG 72238048 Query 20967 CTAAAAA--GTGTGTTGAAG--ACA-----CTCCTGGAGATAAAAAG------------- 21004 | ||||| ||| || ||| ||| | ||| || || || Sbjct 72238049 CCAAAAAACTTGTATTAAAGGAACAGACAGGTTCTGATGACGAAGAGGAGTCAAGTGAAT 72238108 Query 21005 -----TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTA 21059 ||||||||||| || || ||||| || ||||| || ||||| ||| |||| Sbjct 72238109 GGACATTTATGTATTACGTGAACGATGGAGTATATGGGTCATTCAACTG--TATCCTTTA 72238166 Query 21060 --ACCATGCTCGTCCTATGCCTATGCTGCTTAA-AGA---AAAACGCCTTGAAGACAAAG 21113 | ||||| | | |||| | |||| || ||| ||| | || || || Sbjct 72238167 CGATCATGCACACGTGAAGCCTCTTCTGCAGAAGAGACCCAAATC----AGATGAGAAGT 72238222 Query 21114 ACTATGTTTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGT 21173 | ||| || |||| ||||| || | ||| || ||| | || |||||||| |||| | Sbjct 72238223 ATTATTCATCCMGCATCTGGGGACCGACCTGTGACGGCCTGGACYGCATTGTTGAGCGCT 72238282 Query 21174 GTGAACTGCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || | ||||| ||| | || ||||| || ||| | | ||||| |||||||| | ||||| Sbjct 72238283 GTAACCTGCCCGAGATGCATGTGGGTGATTGGATGCTCTTTGAGAACATGGGTGATTACA 72238342 Query 21234 GCTTGGTCAGCT-CTTCAACCTTTAACGGCTTCC 21266 || | ||| |||| ||||| || || |||| Sbjct 72238343 -CTGTTGCTGCTGCTTCTACCTTCAATGGATTCC 72238375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463545414581760