Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq17 141 9e-29 seq19 140 3e-28 seq8 87.8 2e-12 >seq17 Length=76519027 Score = 141 bits (156), Expect = 9e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || |||||||| | ||| ||| || ||||||||||| Sbjct 55474389 GGTCGACTCTTTCTGGATGTTGTAATCAAAAAGAGTGCGGCCGTCTTCCAGCTGCTTGCC 55474330 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| || || ||||||||||| || |||||| ||| Sbjct 55474329 GGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 55474270 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 55474269 CACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 55474210 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 55474209 TTTCACGAAGATCTGCAT 55474192 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 53719317 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 53719258 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| || ||||| |||||| |||| Sbjct 53719257 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 53719198 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| |||||||||| || Sbjct 53719197 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 53719138 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 53719137 TTCACGAAGATCTGCAT 53719121 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 53719545 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGTTTCCC 53719487 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| || ||||| |||||| ||| Sbjct 53719486 GGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTT 53719427 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| |||||||||| || Sbjct 53719426 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGT 53719367 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 53719366 CTTCACGAAGATCTGCAT 53719349 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 53719773 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGTTTCCC 53719715 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| || ||||| |||||| ||| Sbjct 53719714 GGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTT 53719655 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| |||||||||| || Sbjct 53719654 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGT 53719595 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 53719594 CTTCACGAAGATCTGCAT 53719577 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 53720457 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGTTTCCC 53720399 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| || ||||| |||||| ||| Sbjct 53720398 GGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTT 53720339 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| |||||||||| || Sbjct 53720338 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGT 53720279 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 53720278 CTTCACGAAGATCTGCAT 53720261 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 53720913 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGTTTCCC 53720855 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| || ||||| |||||| ||| Sbjct 53720854 GGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTT 53720795 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| |||||||||| || Sbjct 53720794 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGT 53720735 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 53720734 CTTCACGAAGATCTGCAT 53720717 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 53720001 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 53719942 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| || ||||| |||||| |||| Sbjct 53719941 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 53719882 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | |||| ||| |||||||||| || Sbjct 53719881 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAAGGTC 53719822 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 53719821 TTCACGAAGATCTGCAT 53719805 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 53720685 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGTTTCCC 53720627 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| || ||||| |||||| ||| Sbjct 53720626 GGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTT 53720567 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | |||| ||| |||||||||| || Sbjct 53720566 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAAGGT 53720507 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 53720506 CTTCACGAAGATCTGCAT 53720489 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 53719089 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGTTTCCC 53719031 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || ||||||||||| || || ||||| ||| Sbjct 53719030 GGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCCCCTT 53718971 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | |||| |||||| || || || || Sbjct 53718970 GACRTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGT 53718911 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 53718910 CTTCACAAAGATCTGCAT 53718893 >seq19 Length=65317831 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 34140980 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 34141038 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || ||||| ||||| || |||||| || Sbjct 34141039 CGGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCT 34141098 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 34141099 TCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGG 34141158 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 34141159 TCTTCACGAAAATCTGCAT 34141177 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 34141208 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 34141266 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 34141267 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 34141326 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 34141327 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 34141386 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 34141387 TTTTCACGAAGATCTGCAT 34141405 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 34140524 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 34140582 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 34140583 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 34140642 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 34140643 TCACGTTCTCGATGGTGTCACTGGGCTCCACATCCAGGGTGATGGTCTTGCCGGTCAGGG 34140702 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 34140703 TCTTCACGAAGATCTGCAT 34140721 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 34140752 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 34140810 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 34140811 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 34140870 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 34140871 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 34140930 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 34140931 TCTTCACGAAGATCTGCAT 34140949 >seq8 Length=116941312 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || |||||||| || | || || | |||||||| ||||| || |||||||| Sbjct 110779506 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 110779447 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| || | | || || || || | |||||| || |||| |||| | Sbjct 110779446 TCCTGGATCTTGGCYTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATG 110779387 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| || || |||||||||||||| Sbjct 110779386 GTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 110779352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420606631680