Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq3 288 1e-72 seq8 268 1e-66 seq1 206 3e-48 >seq3 Length=127865068 Score = 288 bits (318), Expect = 1e-72 Identities = 418/590 (71%), Gaps = 8/590 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 39198019 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 39198076 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || | || || ||||| | || || ||||| || |||||||| || || Sbjct 39198077 -TCCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 39198135 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | | |||||| || || || || || || || ||||| | Sbjct 39198136 TTGGGGTGTGACACGATCTCAGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAG 39198195 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| || |||| |||||| | | Sbjct 39198196 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAGT 39198255 Query 171743 TCATAGTGTAATGACACAGTAGGTGGAACATAGAGTGTCAGACAGGTCTTACCCGATATT 171802 | |||||| | | || || || || |||| || || |||| | || || || Sbjct 39198256 TTATAGTGAAGGAATACTGTGGG-----CAAAGAGAGTGAGGCAGGCTATTCCTGAGATC 39198310 Query 171803 TTTCCGGACCCAAAAGTATTAAACAAACACATAAAACAGCCTTCGTCCTCCACGGTGGTG 171862 ||||| || ||||| |||||||| | ||| | |||| | || || |||| |||||| Sbjct 39198311 TTTCCAGAACCAAAGGTATTAAAGAGGCACTTGTAACACGCCTCATCTTCCAAGGTGGTA 39198370 Query 171863 TTCCAAAAAGTCAATGTAGAATTTCTGAGTCCGAGTTGCGTAATGTTCACCCGGTCCTTG 171922 ||||| || || | || || || ||||||| || || || ||||| | | ||||||| Sbjct 39198371 TTCCAGAAGGTAATGGTTGAGTTCATGAGTCCCAGCTGGGTGATGTTTATCTTGTCCTTG 39198430 Query 171923 TACGGAGGCTGGACGACAACACCGTGATTCTCGCTGAACGTGGCCATGTTTTCGGGGCTC 171982 || | ||||||||| ||||| || || |||| |||| | ||| ||||||||| ||||| Sbjct 39198431 TAGGCAGGCTGGACTACAACCCCATGGTTCTTGCTGTAGGTGATCATGTTTTCTGGGCTT 39198490 Query 171983 GTAGCCTTTATCTTCTGCCACGTTACTATTAAAACTTCTTTGTCGGTTTGAAGAGAGCAT 172042 |||||| || || ||||| || || || |||||||| | | ||| ||||||||| Sbjct 39198491 ACAGCCTTGATTTTTTGCCATGTCACAATCAAAACTTCCTGGGGATTTTTCAGAGAGCAT 39198550 Query 172043 CTTAAAGAAGCAGGTGTGTTCAATAATTCCCTTTCGTCTTGCGTTACCAC 172092 |||||||||||||||||||||| | | ||| | || || || ||||| Sbjct 39198551 CTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTTACATCCTGGGTCACCAC 39198600 >seq8 Length=116941312 Score = 268 bits (296), Expect = 1e-66 Identities = 662/1001 (66%), Gaps = 9/1001 (1%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| |||||| | |||||||| || || | ||| ||| Sbjct 54906443 CCAGGGCTTTATGCCTYAGATGCTCGTCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 54906384 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| || | || | ||| || | || || | Sbjct 54906383 TGTCGAATTTGTTGGCAAACAAGTGGTGCACGTGC---AACAGCCAGTTCAAGTCACCAG 54906327 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || || ||||| ||||||||||||||||| || |||| || | Sbjct 54906326 CTCCGAAAACGCACACAGAGCGAACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 54906267 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || || |||||||| | Sbjct 54906266 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAG 54906207 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||||| ||||| || | | | || | || || || | || | ||||| | || Sbjct 54906206 ACGTGTCATACTTATAGCTTAAGGACAATGACCCTGGGACTTCGGGGATCCTCTGAATAG 54906147 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | |||||||| || || || || || | ||||||||| |||| | Sbjct 54906146 TGGCCCAGAGATACTCGTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTA 54906087 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| | | || | ||| || || ||| | || | ||| || || || | Sbjct 54906086 TATTTTGGTTCTGGAGCACGTACTCCACATATTCCCTACTGACCACAAAATAGGCACTGC 54906027 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||| || | |||||| ||| |||| | | Sbjct 54906026 CTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGCT 54905967 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | ||||| | | ||| ||||||| | ||||| || | | | | Sbjct 54905966 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTTTCT 54905907 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| |||| ||| ||| ||| |||| | || || || || |||| Sbjct 54905906 CTGTTTCTAGGTTGTTCTCGCCCATCAATAGCTTGAGCTTCCTGACAATTTCCAGGTTGG 54905847 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 54905846 TTTTAATAGGAAAATCCATACCGCAGAGATTTATCAGGTACTTCCAGCCTGCATTCATCT 54905787 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || || ||||| ||||| ||||| | Sbjct 54905786 GGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCA 54905727 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC--CATC-A 162835 ||||||||| | | |||||||||||||||| ||| || || | || || || | Sbjct 54905726 CGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAACAGCTG 54905667 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 | |||| || | || || | ||| ||| ||||| | || || | |||||||| Sbjct 54905666 CAGCCAAAAAGGATTTC---TCTGATTTTGCATCCACGTGAATACAATAGAAATTCTGAG 54905610 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | |||||||||||||| | || || | ||| || || || || || ||||| |||| Sbjct 54905609 GCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAG 54905550 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015 |||| ||||| || || | ||||| || ||| || | |||||| || ||||| | Sbjct 54905549 AATATGCTATTGGAAATCCCGCCTCTTCTTTACTAAGTGGTTCTGTAATATATTTGCGCT 54905490 Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | || | ||||| || | |||||||| | |||| Sbjct 54905489 TCTTAATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 54905449 >seq1 Length=161108492 Score = 206 bits (228), Expect = 3e-48 Identities = 239/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 57810429 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 57810488 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || || |||| |||||| ||||| || || | || || || ||| Sbjct 57810489 ACTTGTAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 57810548 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | ||||||||| ||||| ||||| | Sbjct 57810549 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCGTGGT 57810608 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 57810609 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 57810668 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | ||| ||||||||||||||||||||||||||||||| | Sbjct 57810669 TCAAAACTTCCTGGGGATTTTTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 57810728 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 57810729 CTCTTACATCCTGGGTCACCAC 57810750 Score = 104 bits (114), Expect = 3e-17 Identities = 157/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 57807764 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 57807821 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || | || || ||||| | || || ||||| || |||||||| || || Sbjct 57807822 -TCCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 57807880 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | | ||||| || || || || || || || ||||| | Sbjct 57807881 TTGGGGTGTGACACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAG 57807940 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || | ||| ||||| | |||| | ||||||||||| || |||| Sbjct 57807941 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 57807983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578431768627200