Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq17 109 4e-19 seq19 86.0 4e-12 >seq17 Length=76519027 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 53719119 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 53719060 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 53719059 AGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53719000 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || ||| || | | | || | |||||| || | ||||| Sbjct 53718999 ATGCCTTCTTTTTCTTGTATCTTCCCCTTGA-CRTTCTCGATGGTGTCACTGGGCTCCAC 53718941 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| |||||||| || | || || |||||||||||||| || Sbjct 53718940 CTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATTGT 53718890 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || || || || | ||||| || |||||| |||||| || |||||||| || | Sbjct 53720945 CACCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 53720886 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | | Sbjct 53720885 ACAGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGG 53720826 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| || || || | | | || | |||||| || | ||| Sbjct 53720825 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCC 53720767 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || || || || || ||||||||||| Sbjct 53720766 ACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53720717 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| |||||| || |||||||| || || Sbjct 53719347 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 53719288 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 53719287 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53719228 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 53719227 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 53719169 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 53719168 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53719121 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| |||||| || |||||||| || || Sbjct 53719575 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 53719516 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 53719515 AGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53719456 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 53719455 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 53719397 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 53719396 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53719349 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| |||||| || |||||||| || || Sbjct 53719803 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 53719744 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 53719743 AGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53719684 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 53719683 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 53719625 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 53719624 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53719577 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| |||||| || |||||||| || || Sbjct 53720031 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 53719972 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 53719971 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53719912 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 53719911 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 53719853 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 53719852 CTCCAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53719805 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 53720259 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 53720200 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| |||||||||||||| |||| | |||||| ||| | || Sbjct 53720199 AGGGTGCGCCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53720140 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || | | || | || | |||||| || | ||||| Sbjct 53720139 ATGCCCTCTTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 53720081 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 53720080 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53720033 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| |||||| || |||||||| || || Sbjct 53720487 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 53720428 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 53720427 AGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53720368 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 53720367 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 53720309 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 53720308 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53720261 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| |||||| || |||||||| || || Sbjct 53720715 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 53720656 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 53720655 AGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53720596 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 53720595 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 53720537 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 53720536 CTCCAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53720489 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || || || |||||| || ||||||||||| | Sbjct 55474418 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAAAA 55474359 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || |||||||| || | | |||||| || | || Sbjct 55474358 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 55474299 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || ||| || | || | |||||| || | ||||| Sbjct 55474298 ATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCAC 55474240 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| || ||||||||||| Sbjct 55474239 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 55474192 >seq19 Length=65317831 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| ||| | |||| || || || |||||| || ||||||||||| || Sbjct 34141178 ACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 34141237 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || |||||||| || | | |||||| || | || Sbjct 34141238 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGG 34141297 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || ||| || | || | |||||| || | |||| Sbjct 34141298 AATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCA 34141356 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| || ||||||||||| Sbjct 34141357 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 34141405 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| ||| | |||| || || || |||||| || ||||||||||| || Sbjct 34140722 ACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 34140781 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || |||||||| || | | |||||| || | || Sbjct 34140782 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGG 34140841 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || ||| || | || | |||||| || | |||| Sbjct 34140842 AATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCA 34140900 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 34140901 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 34140950 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || || || |||||| || ||||||||||| || Sbjct 34140495 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 34140554 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| || | | |||||| || | || Sbjct 34140555 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 34140614 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || ||| || | || | |||||| || | ||||| Sbjct 34140615 ATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCAC 34140673 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || |||||||||||| Sbjct 34140674 ATCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 34140722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703871805440