Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8 131 4e-25 seq17 114 3e-20 seq19 102 2e-16 seq12 86.0 1e-11 >seq8 Length=116941312 Score = 131 bits (144), Expect = 4e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || || || || ||||| ||| Sbjct 110779367 AAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAGCCCTCGGATACAGTAGAAAAT 110779426 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 110779427 GTAAARGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 110779486 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || |||||| Sbjct 110779487 GCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATGCAAAAGGAGTCT 110779546 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || ||||||||||| Sbjct 110779547 ACTCTTCATCTAGTGTTGAGACTTCG 110779572 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||||||||| || || | || ||||||| |||||| Sbjct 110779572 CGAAGTCTCAACACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAAGTA 110779513 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || || ||||| || | ||| || Sbjct 110779512 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 110779469 >seq17 Length=76519027 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || ||||| |||||| |||| ||||| |||| Sbjct 53718896 CAGATCTTTGTGAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAGTGAC 53718955 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| |||||||||||||| || || ||| || Sbjct 53718956 ACCATCGAGAAYGTCAAGGGGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAGCAG 53719015 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| ||||| || ||| |||||||||| | || || | || |||||| || Sbjct 53719016 AGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 53719075 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 53719076 CAGAAGGAGTCCACTCTGCACCTGGT 53719101 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| |||| ||||| |||||| |||| || ||| Sbjct 53719829 ACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 53719888 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 53719889 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 53719948 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 53719949 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 53720008 Query 206374 CTTGT 206378 || || Sbjct 53720009 CTGGT 53720013 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| |||| ||||| |||||| |||| || ||| Sbjct 53720513 ACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 53720572 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 53720573 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 53720632 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 53720633 CAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 53720692 Query 206374 CTTGT 206378 || || Sbjct 53720693 CTGGT 53720697 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| |||| ||||| |||||| |||| Sbjct 55474207 AAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 55474266 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 55474267 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 55474326 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| ||||||| || | ||| | ||||||||| ||||||||||||| Sbjct 55474327 GCCGGCAAGCAGCTGGAAGACGGCCGCACTCTTTTTGATTACAACATCCAGAAAGAGTCG 55474386 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 55474387 ACCCTGCACCTGGT 55474400 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 53719145 ACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 53719204 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 53719205 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 53719264 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 53719265 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 53719324 Query 206374 CTTGT 206378 || || Sbjct 53719325 CTGGT 53719329 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 53719373 ACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 53719432 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 53719433 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 53719492 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 53719493 CAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 53719552 Query 206374 CTTGT 206378 || || Sbjct 53719553 CTGGT 53719557 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 53719601 ACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 53719660 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 53719661 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 53719720 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 53719721 CAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 53719780 Query 206374 CTTGT 206378 || || Sbjct 53719781 CTGGT 53719785 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 53720285 ACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 53720344 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 53720345 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 53720404 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 53720405 CAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 53720464 Query 206374 CTTGT 206378 || || Sbjct 53720465 CTGGT 53720469 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 53720741 ACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 53720800 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 53720801 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 53720860 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 53720861 CAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 53720920 >seq19 Length=65317831 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| |||| ||||| |||||| |||| Sbjct 34141390 AAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 34141331 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 34141330 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 34141271 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 34141270 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 34141211 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 34141210 ACCCTGCACCTGGT 34141197 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| |||| Sbjct 34140706 AAGACCCTGACCGGCAAGACCATCACCCTGGATGTGGAGCCCAGTGACACCATCGAGAAC 34140647 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 34140646 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 34140587 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 34140586 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 34140527 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 34140526 ACCCTGCACCTGGT 34140513 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| |||| Sbjct 34140934 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 34140875 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 34140874 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 34140815 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 34140814 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 34140755 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 34140754 ACCCTGCACCTGGT 34140741 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| |||||| |||| Sbjct 34141162 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAC 34141103 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || ||| || || || ||||| Sbjct 34141102 GTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGCAGAGGCTCATCTTT 34141043 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 34141042 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 34140983 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 34140982 ACCCTGCACCTGGT 34140969 >seq12 Length=85442668 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| || | || ||||| ||||| ||| Sbjct 3920011 AAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAGAAGCTCATCTTTGCCGGCAAG 3919952 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | | ||||||||| ||||||||||||| || || ||| Sbjct 3919951 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCAC 3919892 Query 206374 CTTGT 206378 || || Sbjct 3919891 CTGGT 3919887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820315453472