Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq23 107 6e-20 seq29 104 7e-19 seq15 104 7e-19 seq18 102 3e-18 seq17 98.7 3e-17 seq12 98.7 3e-17 seq7 98.7 3e-17 seq13 95.1 4e-16 seq30 91.5 5e-15 seq19 89.7 2e-14 seq24 87.8 6e-14 seq5 80.6 8e-12 >seq23 Length=53331160 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 30160225 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 30160166 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 30160165 TCCCGGGTTTCGGC 30160152 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 31073879 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 31073820 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 31073819 TCCCGGGTTTCGGC 31073806 Score = 100 bits (110), Expect = 9e-18 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| | Sbjct 30170239 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAASATCTAAAGGTCCCTGGTTCAATC 30170298 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 30170299 CCGGGTTTCGGC 30170310 Score = 100 bits (110), Expect = 9e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 30322221 GGCTGAAATAGCTCAGTTGAGAGAGCATTAGACTGAAGATCTAAAKGTCCCTGGTTCAAT 30322280 Query 2828 CCCGGGCTT 2836 ||| || || Sbjct 30322281 CCCAGGTTT 30322289 Score = 100 bits (110), Expect = 9e-18 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 50898400 TAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGTT 50898341 Query 2836 TCAGC 2840 || || Sbjct 50898340 TCGGC 50898336 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 30024320 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 30024379 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 30024380 CCGGGTTTCGGC 30024391 >seq29 Length=52131593 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 38949100 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 38949159 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 38949160 CCGGGTTTCGGC 38949171 >seq15 Length=84800079 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 83818807 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 83818748 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 83818747 CCGGGTTTCGGC 83818736 Score = 100 bits (110), Expect = 9e-18 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| | Sbjct 83824228 GCCGAAATAGCTCARTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 83824169 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 83824168 CCGGGTTTCGGC 83824157 Score = 95.1 bits (104), Expect = 4e-16 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 82907028 TGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAGTCCC 82906969 Query 2831 GGGCTTCAGC 2840 || ||| || Sbjct 82906968 AGGTTTCGGC 82906959 >seq18 Length=65948792 Score = 102 bits (112), Expect = 3e-18 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 23385192 ATGGCTGAAATAGCTCAATTGGGAGAGCATTAGTCTGAAGATCTAAAGGTCCCTGGTTCA 23385251 Query 2826 ACCCCGGGCTT 2836 | ||| || || Sbjct 23385252 ATCCCAGGTTT 23385262 >seq17 Length=76519027 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 53707007 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 53707066 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 53707067 CCGGGTTTCGGC 53707078 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || ||| ||||||||||||| ||||||| |||||||||||||||||||||||| || || Sbjct 54285326 AAATAGTTCAGTTGGGAGAGTGTTAGACTAAAGATCTAAAGGTCCCTGGTTCAATCCTGG 54285385 Query 2833 GCTTCAGC 2840 | |||||| Sbjct 54285386 GTTTCAGC 54285393 >seq12 Length=85442668 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 68025090 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 68025031 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 68025030 CCGGGTTTCGGC 68025019 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 68128008 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 68127949 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 68127948 CCGGGTTTCGGC 68127937 >seq7 Length=111948857 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 42862367 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 42862308 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 42862307 CCGGGTTTCGGC 42862296 >seq13 Length=84433108 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct 15861873 GCTGAAATAGCTCTGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAGTC 15861932 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 15861933 CCGGGTTTCGGC 15861944 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||| |||||| |||| |||||||||||||||||| |||||||| ||||| Sbjct 6741590 AAATAGCTCAGTTAGGAGAGTGTTAGGCTGAAGATCTAAAGGTCCTTGGTTCAATCCCGG 6741531 Query 2833 GCTTCAGC 2840 | |||||| Sbjct 6741530 GTTTCAGC 6741523 >seq30 Length=88516652 Score = 91.5 bits (100), Expect = 5e-15 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| | |||||||||||||||||||||| ||||||||||||||||||||||||| | | Sbjct 77444715 GCTGGAAAAGCTCAGTTGGGAGAGCATTAGCCTGAAGATCTAAAGGTCCCTGGTTCGATC 77444774 Query 2829 CCGGG 2833 ||||| Sbjct 77444775 CCGGG 77444779 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||| Sbjct 77446110 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGTTCTAAAGGTCCCTGGTTCGATCCCGGG 77446167 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||| Sbjct 77447353 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGTTCTAAAGGTCCCTGGTTCGATCCCGGG 77447410 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||| Sbjct 77454095 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGTTCTAAAGGTCCCTGGTTCGATCCCGGG 77454152 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||||||||||| ||| ||||||||||||||| |||||||||||| || ||| Sbjct 77454584 TAGCTCAGTTGGGAGAGGGTTACACTGAAGATCTAAAGCTCCCTGGTTCAATCCAGGG 77454641 >seq19 Length=65317831 Score = 89.7 bits (98), Expect = 2e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||| | ||||||||||||| || ||||||||||||||| || | Sbjct 6714830 GAAATAGCTCAGTTGGGAGAACCTTAGACTGAAGATGTAGAGGTCCCTGGTTCAATCCTG 6714771 Query 2832 GGCTTCAGC 2840 || |||||| Sbjct 6714770 GGTTTCAGC 6714762 >seq24 Length=65017658 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 7194919 GCTGAAATAGCTCAGTTGGGAGATAATTAGGCTGAAGATCTAAAGGTCCCTGGTTCAA 7194976 >seq5 Length=125642736 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||| |||||||||||| ||||||||||||||||||| || || Sbjct 58931720 AAATAGCTCAGTTGGGAGACTGTTAGACTGAAGACCTAAAGGTCCCTGGTTCAATCCTGG 58931661 Query 2833 GCTT 2836 | || Sbjct 58931660 GTTT 58931657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849594452640