Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3 473 1e-128 seq1 282 5e-71 seq24 170 2e-37 seq22 145 9e-30 seq16 143 3e-29 >seq3 Length=127865068 Score = 473 bits (524), Expect = 1e-128 Identities = 505/666 (76%), Gaps = 8/666 (1%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 39198600 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 39198541 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 39198540 AAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 39198481 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||||| |||| ||||| || |||||||| || || ||||||||| Sbjct 39198480 AACATGATCACCTACAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 39198421 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 39198420 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 39198361 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 39198360 GAAGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 39198301 Query 171372 GTGGCCTGCCTCACCCTCTCCGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGAT 171431 | ||||||||||| |||| |||||| || || || || |||||| | | ||| Sbjct 39198300 ATAGCCTGCCTCACTCTCT-----TTGCCCACAGTATTCCTTCACTATAAACTATCTGAA 39198246 Query 171432 GACCACCTGAACATCACCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAG 171491 || ||||| || ||||| || ||||||||||| ||||| | ||| ||| | |||||| Sbjct 39198245 GATCACCTAAATATCACTTGCTCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAG 39198186 Query 171492 ATTTCGGGGTCAGAAATTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACT 171551 | | ||||||| ||||| ||||||| ||| | | || || | |||||||| || Sbjct 39198185 GTCTTTGGGTCAGGGATTGAGAACAGTACTGAGATCGTGTCACACCCCAATGGAACAACA 39198126 Query 171552 TCTGTAACCAGTGTACTCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATC 171611 ||||| ||||| | ||||| | ||||||||||||| ||| |||| ||||| || ||| Sbjct 39198125 TCTGTCACCAGCATCCTCCAGATCAAAGACCCCAAGACACAGGTGGGGAAGGATGTGATC 39198066 Query 171612 TGCCAAGTGTGGCACCTGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTATT 171671 ||||| ||| |||||||| | ||| || ||| ||||||||||| | ||| || || Sbjct 39198065 TGCCAGGTGCTACACCTGGGGACTGTGACCGACTACAGGGAAACTGTGAACAAAGGCTTT 39198006 Query 171672 TGGTTTTCAGTCCCGTTGCTGATAAGTCTCTTGTCTTTGGTAATAATTTTACTGGTTGTA 171731 ||||||||||| || || || |||| || | || |||| ||||| | ||||| || Sbjct 39198005 TGGTTTTCAGTTCCACTGTTGTTAAGCATCGTCTCCTTGG---TAATTCTTCTGGTCTTA 39197949 Query 171732 ATTGTA 171737 ||| || Sbjct 39197948 ATTCTA 39197943 >seq1 Length=161108492 Score = 282 bits (312), Expect = 5e-71 Identities = 254/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 57810750 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 57810691 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 57810690 AAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 57810631 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||||||||| || |||||||| || || ||||||||| Sbjct 57810630 AACATGATCACCTACAGCGAGAACCACGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 57810571 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 57810570 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 57810511 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 57810510 GAAGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 57810451 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 57810450 ATAGCCTGCCTCACTCTCT 57810432 Score = 194 bits (214), Expect = 2e-44 Identities = 217/290 (75%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || |||||| | | ||| || ||||| || ||||| || Sbjct 57808029 GTACAGCCCACAGTATTCCTTCACTATAAACTATCTGAAGATCACCTAAATATCACTTGC 57807970 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | |||||| | | ||||||| ||||| Sbjct 57807969 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGGTCTTTGGGTCAGGGATTGAG 57807910 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| |||| | | || || | |||||||| || ||||| ||||| | ||||| Sbjct 57807909 AACAGTACCGAGATCGTGTCACACCCCAATGGAACAACATCTGTCACCAGCATCCTCCAG 57807850 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | ||||||||||||| ||| |||| ||||| || |||||||| ||| |||||||| Sbjct 57807849 ATCAAAGACCCCAAGACACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGG 57807790 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTATTTGGTTTTCAGT 171682 | ||| || ||| ||||||||||| | ||| |||| ||||||| || Sbjct 57807789 ACTGTGACCGACTACAGGGAAACTGTGAACAAAGGTAAGAGGTTTTCTGT 57807740 >seq24 Length=65017658 Score = 170 bits (188), Expect = 2e-37 Identities = 148/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 36763418 CTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 36763359 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||||||||||| |||||||| |||||| || | |||||| | Sbjct 36763358 GGGCACACCCAGGCCCATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATT 36763299 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| |||||| || || || |||||| ||||| || | Sbjct 36763298 CACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGCAGATCTGA 36763239 Query 147162 GGGG 147165 |||| Sbjct 36763238 GGGG 36763235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| || | || || ||||| Sbjct 36761034 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTTCAGCTCTGTCG 36760975 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | | || || ||||||| | ||| ||||| || ||||||| Sbjct 36760974 GAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATCCCAAATTTTCACTCCC 36760915 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||||| ||||||| || ||||| ||| Sbjct 36760914 TTGGAAGAGAGTTCCTTAGCGTTGGTGGATCCC 36760882 >seq22 Length=61892534 Score = 145 bits (160), Expect = 9e-30 Identities = 215/304 (71%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| || || || | ||||| | ||||| | | | |||| Sbjct 54541068 GTACTCCCTGGTGTTYGTGACCGGCCTGCTGGGCAACGTGGTGGTGGTGGTGATACTCAC 54541009 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||||| ||||| |||||||||||||||||| |||| ||||||||||| || ||| Sbjct 54541008 AAAGTACAAGCGGCTCCGGATCATGACCAACATCTACCTGCTCAACCTGGCCATTTCTGA 54540949 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || || || |||||||||| | || ||||| |||| Sbjct 54540948 CGTGCTCTTCCTATTCACRCTGCCATTCTGGATTCACT--ATGTTAGGTGGAACGAGTGG 54540891 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||| | ||||| |||||||||||| | || || | || ||| |||| Sbjct 54540890 GTG----TTTGGCCACCGCATGTGTAAGTTGCTCTCCGGGCTCTATTACATGGGCTTGTA 54540835 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || |||||||| ||||| | ||| |||||||||| | || |||| Sbjct 54540834 CAGTGAGATCTTTTTCATCATCCTCTTGACCATAGACCGGTATCTTGCCATCGTCCACGC 54540775 Query 8910 GGTG 8913 ||| Sbjct 54540774 CGTG 54540771 Score = 109 bits (120), Expect = 6e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || | ||||| ||||||| |||| |||||||| Sbjct 54633659 GTACTCGGTGGTGTTTGTCATTGGCCTGGTCGGCAACATCCTGGTGGTCCTGGTCCTCAT 54633718 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 54633719 GCAATACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 54633778 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 ||| | | | ||||| || ||||| ||||| Sbjct 54633779 CCTYATCTTCCTCTTCACGCTGCCCTTCTGGAT 54633811 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||||| | ||| ||||||||| ||| |||||||| |||||||||| Sbjct 54540355 TGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTGTGTCAACCCCG 54540296 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| || || || || || | ||||| Sbjct 54540295 TGATCTATGCCTTCGTTGGTGAGAGGTTCC 54540266 >seq16 Length=77906047 Score = 143 bits (158), Expect = 3e-29 Identities = 130/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||| ||||||| Sbjct 3570878 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAAGAGGTGA 3570819 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| |||| ||||| ||| || || ||||| |||||||| || |||| Sbjct 3570818 TGCCAMAGGCTGAGAACCAC------------GGGCCTGACATCAAGGAGCACGTGAACT 3570771 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| | || |||||||||| ||| Sbjct 3570770 CACTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGGCTGCGGCGCTGT 3570724 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 3568569 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 3568510 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | ||||||||||| || ||| Sbjct 3568509 TAGAAACCTACATGACAACGAAGATG 3568484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487766604800