Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq15 123 3e-23 seq11 120 4e-22 seq14 109 8e-19 seq31 91.5 2e-13 seq13 84.2 3e-11 >seq15 Length=84800079 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 50570452 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 50570511 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 50570512 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 50570571 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 50570572 TTTCTTACACCAT 50570584 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| |||| ||| || ||||| ||||| || || || | ||| || || ||||| | Sbjct 50594041 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCA 50594100 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| | || ||||| || |||| Sbjct 50594101 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTAT 50594160 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 70499 | | ||| | ||| || || || | |||| ||||| || || ||||| Sbjct 50594161 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACCTTCAT 50594209 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||||| || ||||| |||||||| || ||||||| |||||||||||||||||||| Sbjct 50581095 ATATAGCTTCTCAAATTCTTCTCCCCAGACCTCATCCAGACCAGGACATTCATTTGGACA 50581154 Query 69567 CATCAATGACCA 69578 |||||| ||||| Sbjct 50581155 CATCAAAGACCA 50581166 >seq11 Length=110256634 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 90332803 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 90332862 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 90332863 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 90332922 Query 39759 CAAC 39762 | || Sbjct 90332923 CTAC 90332926 >seq14 Length=81409030 Score = 109 bits (120), Expect = 8e-19 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||||| || || | || || ||||| |||||||||||||| || || | || || Sbjct 60398715 TCATCTCKGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 60398656 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 60398655 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGCC 60398596 Query 39761 ACAAGTCTCTCTCC 39774 || | ||||| || Sbjct 60398595 ACCACCCTCTCCCC 60398582 >seq31 Length=39421065 Score = 91.5 bits (100), Expect = 2e-13 Identities = 222/332 (67%), Gaps = 7/332 (2%) Strand=Plus/Minus Query 37372 CCTCTATCTGTACCATCTAGAGATTGTACTTCATTCAGATCAGGATAATATATACGTTGA 37431 || || || || |||||| | ||| ||||| | | || || ||| |||| |||| | Sbjct 658967 CCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAGATATCCGTTCA 658908 Query 37432 TAGATTAGCTGAGCTATTCTATCGCCCGTATTTATTTTAAAATTACATTTTCCATTATTT 37491 || ||||| || ||| ||| ||| | || | || ||| || ||| ||| ||| Sbjct 658907 CGAATGAGCTGTGCAATTTGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAGATTA 658848 Query 37492 ATCAGAATGACTCCAATATTCCCCCTATAATCTTCATCGATTACTCCGCCTCCTACATC- 37550 | ||| | || |||| ||| || |||||||||||||| ||||| || |||||||||| Sbjct 658847 AACAGGACAACACCAACATTTCCTCTATAATCTTCATCTATTACACCAGCTCCTACATCT 658788 Query 37551 --AATACCTTTTAGAGACAAACCCGATCTAGGAGCTATTCTTCCATAACAAAATTTGGGC 37608 | |||| | ||| || || | |||||| | ||||||||| || || Sbjct 658787 TTGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCACCCAGAAGGA 658728 Query 37609 ATAGACATCCGAATATCTGTTTTAATCAATTGTCTTTCTCCA--GGAAGGATGGTATAAT 37666 | | ||| |||| || ||||| | ||| ||||||||| || | | || |||| Sbjct 658727 ACGGCTATCTGAATGTCAGTTTTCA-CAA-GCACTTTCTCCATCGGTGGTACTGTGTAAT 658670 Query 37667 CGTACGCGCTATATAAATCATATCCCGCGGCA 37698 | || || || || | ||||| ||| ||||| Sbjct 658669 CATAGGCACTGTACAGGTCATAGCCCACGGCA 658638 >seq13 Length=84433108 Score = 84.2 bits (92), Expect = 3e-11 Identities = 172/255 (67%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || || |||||| | ||| ||||| | Sbjct 33720380 TCCAGTGGAACCAAAGCCTCTTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 33720321 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 | || || ||| |||| |||| | | || ||||| || |||| | | | || | Sbjct 33720320 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCAAAC-----TTTTGAC 33720266 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || ||| || ||| ||| ||| | ||| | || |||| |||||| ||||||||||| Sbjct 33720265 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCTTC 33720206 Query 37527 ATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGC 37583 ||| || || || |||||||||| || || | | ||| || || | |||||| Sbjct 33720205 ATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGAGC 33720146 Query 37584 TATTCTTCCATAACA 37598 | ||||||||| || Sbjct 33720145 CACTCTTCCATAGCA 33720131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908525236480