Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq10 224 8e-54 seq3 224 8e-54 seq1 192 5e-44 seq24 113 4e-20 seq5 102 7e-17 >seq10 Length=106310653 Score = 224 bits (248), Expect = 8e-54 Identities = 385/555 (69%), Gaps = 11/555 (2%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || |||||||| || || || || || ||| Sbjct 77680024 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGGAACCTG--- 77680080 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCT---TCTTCCACT 2256 ||| | || | |||||||| | |||| |||| |||||| | ||||| Sbjct 77680081 --GCCACYGCTCAGGAATGAATTCCAGTATTTCCAAAGAATGACTACAGTCTCTTCAGTA 77680138 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||||| || |||||| | || ||||| ||||| || |||| || Sbjct 77680139 GAAGGTAAACAGAATGTGGTGATTATGCGTAGGAAGACCTGGTTCTCCATTCCAGAGAAG 77680198 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||||| || ||||||| ||| | |||||||||||| | || || || || ||| Sbjct 77680199 AATTGACCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGAACCTCCA 77680258 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 || ||||| ||| |||| | |||| | ||| | || | ||| |||| || ||| Sbjct 77680259 AAGGGAGCTCATTTTCTTGCCAGAAGTCTGGATGATGCCTTTGAACTTATTGAAGATCCA 77680318 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 ||||||||| | | || || | | |||||||| | || || || ||||| ||| |||| Sbjct 77680319 GAATTAAAAAATAAAGTAGACATGGTTTGGATACTGGGAGGCAGTTCTGTTTATAAGGAA 77680378 Query 2497 AGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAA-AAATTTG 2554 ||| ||||| | || | | || ||| | |||||||| |||| || |||| Sbjct 77680379 GCCATGAACAAG-CCAGGCCATGTTAGACTATTTGTGACAAGGATCAAGCAAGAATTTTG 77680437 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || ||||| | | |||||||||||| || || ||||| |||| ||| | |||| || Sbjct 77680438 AAAGTGATGCGTTTTTCCCAGAAATTGATTTTGAAAAATATAAACTTCTTCCAGAATATC 77680497 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 |||||||||| | | || || || ||||| || |||| ||||||||||| |||||| Sbjct 77680498 CAGGTGTTCCTTTGGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATTTGAAGTATATG 77680557 Query 2675 aaaaaaaaaCATAAT 2689 |||| || | |||| Sbjct 77680558 AAAAGAACAATTAAT 77680572 >seq3 Length=127865068 Score = 224 bits (248), Expect = 8e-54 Identities = 321/449 (71%), Gaps = 5/449 (1%) Strand=Plus/Minus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 39198534 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 39198475 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || || |||| |||||||| || ||||| || ||||| || || || ||| Sbjct 39198474 ATCACCTACAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 39198415 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 39198414 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAAGAT 39198355 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 39198354 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 39198295 Query 1515 TGTCTAACCCTTTTTGTACCATCCCGGGCTTCTATAAGCTATGAGTTATCTGAAGGAAGC 1574 || || || || |||| || | | | ||| | | |||| | ||||||||| | Sbjct 39198294 TGCCTCACTCTCTTTG--CC--CACAGTATTCCTTCA-CTATAAACTATCTGAAGATCAC 39198240 Query 1575 TTAAATGTTACGTGCTCTGCAAATGCCCGCCCAGTACCAACAATGGTATGGAATTTTAAT 1634 ||||| | || |||||||| ||||| ||||||| || | || ||||| | | Sbjct 39198239 CTAAATATCACTTGCTCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGGTCTTT 39198180 Query 1635 GATACAGACAGCTACAATAATACTGAAATTATAACCCACCCCAATGGAACAACATCTATT 1694 | ||| | | || | |||||| || | | ||||||||||||||||||||| | Sbjct 39198179 GGGTCAGGGATTGAGAACAGTACTGAGATCGTGTCACACCCCAATGGAACAACATCTGTC 39198120 Query 1695 GTCAGTGTTCTCTACATCAGAGATCCAAA 1723 ||| | ||| | |||| ||| || || Sbjct 39198119 ACCAGCATCCTCCAGATCAAAGACCCCAA 39198091 >seq1 Length=161108492 Score = 192 bits (212), Expect = 5e-44 Identities = 196/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 57810684 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 57810625 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | ||||||||||||| || ||||| || ||||| || || || ||| Sbjct 57810624 ATCACCTACAGCGAGAACCACGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 57810565 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 57810564 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAAGAT 57810505 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 57810504 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 57810445 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 57810444 TGCCTCACTCTCTTTG 57810429 >seq24 Length=65017658 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 64210557 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 64210498 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 64210497 TTCGGAGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 64210438 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 64210437 ATCGCCCTGTGGATGACCGA 64210418 >seq5 Length=125642736 Score = 102 bits (112), Expect = 7e-17 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 2524 CTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAAT 2583 || ||| | |||||||| ||||| |||||||| ||||||| | || ||| ||||| || Sbjct 53295183 CTATTTGTGACAAGGATCATGCAAGAATTTGAAAGTGATACCTTTTTTCCACAAATTGAT 53295124 Query 2584 CTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAA 2643 || || |||| || | |||| | |||||||||| |||| || || || ||| Sbjct 53295123 TCGGAAAAGTATAAACTTCTCCCAGAATATACAGGTGTTCCTTCTGATGTCCAGGAGGAA 53295064 Query 2644 AATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 || || |||| ||||||||||| |||||||||| || | |||| Sbjct 53295063 AAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAACAATTAAT 53295018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414476638354048