Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8 120 2e-22 seq17 100 2e-16 seq19 95.1 8e-15 >seq8 Length=116941312 Score = 120 bits (132), Expect = 2e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || ||||||||||| ||||| || Sbjct 110779349 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAGCCC 110779408 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || || |||| |||| || || || || ||||| | || || || Sbjct 110779409 TCGGATACAGTAGAAAATGTAAARGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 110779468 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | | | ||||| || ||| Sbjct 110779469 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 110779528 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||||| || | ||| |||| || || Sbjct 110779529 AACATGCAAAAGGAGTCTACTCTTCATCTAGTGTTGAG 110779566 >seq17 Length=76519027 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| || || || || ||||| || || || || || Sbjct 55474189 AAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 55474248 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || || ||||| | || || || Sbjct 55474249 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGAC 55474308 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || |||||||||| |||||| | |||||| Sbjct 55474309 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTTTTTGATTAC 55474368 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 55474369 AACATCCAGAAAGAGTCGAC 55474388 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || |||||||| || || || ||| Sbjct 53719805 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 53719864 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || |||||||| || | || ||||| || Sbjct 53719865 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 53719924 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | ||||| | || |||||| Sbjct 53719925 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 53719984 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 53719985 ATCCAGAAAGAGTCCAC 53720001 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || |||||||| || || || ||| Sbjct 53720489 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 53720548 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || |||||||| || | || ||||| || Sbjct 53720549 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 53720608 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | ||||| | || |||||| Sbjct 53720609 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 53720668 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 53720669 ATCCAGAAAGAGTCCAC 53720685 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 53719121 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 53719180 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || |||||||| || | || ||||| || Sbjct 53719181 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 53719240 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | ||||| | || |||||| Sbjct 53719241 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 53719300 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 53719301 ATCCAGAAAGAGTCCAC 53719317 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 53719349 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 53719408 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || |||||||| || | || ||||| || Sbjct 53719409 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 53719468 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | ||||| | || |||||| Sbjct 53719469 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 53719528 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 53719529 ATCCAGAAAGAGTCCAC 53719545 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 53719577 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 53719636 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || |||||||| || | || ||||| || Sbjct 53719637 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 53719696 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | ||||| | || |||||| Sbjct 53719697 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 53719756 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 53719757 ATCCAGAAAGAGTCCAC 53719773 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 53720261 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 53720320 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || |||||||| || | || ||||| || Sbjct 53720321 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 53720380 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | ||||| | || |||||| Sbjct 53720381 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 53720440 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 53720441 ATCCAGAAAGAGTCCAC 53720457 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 53720717 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 53720776 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || |||||||| || | || ||||| || Sbjct 53720777 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 53720836 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| |||||||| | ||||| | || |||||| Sbjct 53720837 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 53720896 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 53720897 ATCCAGAAAGAGTCCAC 53720913 >seq19 Length=65317831 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| || || || || ||||| || || || || || Sbjct 34141408 AAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 34141349 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || || ||||| | || || || Sbjct 34141348 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGAC 34141289 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || |||||||| | |||||| | |||||| Sbjct 34141288 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 34141229 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 34141228 AACATCCAGAAAGAGTCGAC 34141209 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| || ||||| || ||| Sbjct 34141177 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 34141118 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || || || | || || || || Sbjct 34141117 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAG 34141058 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 34141057 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 34140998 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 34140997 ATCCAGAAAGAGTCGAC 34140981 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 34140721 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGATGTGGAGCCCAGT 34140662 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 34140661 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 34140602 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 34140601 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 34140542 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 34140541 ATCCAGAAAGAGTCGAC 34140525 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 34140949 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 34140890 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 34140889 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 34140830 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 34140829 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 34140770 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 34140769 ATCCAGAAAGAGTCGAC 34140753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009468176256