Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq31 122 7e-23 seq13 113 4e-20 seq11 104 2e-17 seq14 89.7 4e-13 >seq31 Length=39421065 Score = 122 bits (134), Expect = 7e-23 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | || Sbjct 658695 AGTGCTTGTGAAAACTGACATTCAGATAGCCGTTCCTTCTGGGTGCTATGGAAGAGTGGC 658754 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||||| ||||||| |||||||| | || || || || ||||| |||||| Sbjct 658755 TCCTCGTTCTGGCTTGGCAGCAAAACACTTCAAAGATGTAGGAGCTGGTGTAATAGATGA 658814 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||| ||||||||||| ||||| |||| |||||||| |||| Sbjct 658815 AGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATCTTGG 658856 >seq13 Length=84433108 Score = 113 bits (124), Expect = 4e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || |||| || ||||| || | | ||||| |||||||| ||| || | || Sbjct 33720088 AGTGCTTGTGGAAACTGACATTCAGATAGCCSTTCCTTCTGGGTGCTATGGAAGAGTGGC 33720147 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||||| ||||||| ||| ||| || || || || || ||||| |||||| Sbjct 33720148 TCCTCGTTCTGGCTTGGCAGCAGAACCCTTCATAGATGTAGGAGCTGGTGTCATAGATGA 33720207 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||| |||||||| || ||||| |||| ||||||||||||| Sbjct 33720208 AGATTATAGAGGGAATGTTGGTGTTGTCCTGTTTAATTTTGG 33720249 >seq11 Length=110256634 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 90332805 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 90332864 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 90332865 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 90332924 Query 4692 AC 4693 || Sbjct 90332925 AC 90332926 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 90334547 TCTTTAATGTAAGTGTCAATSAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 90334606 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | || || || | |||||||| Sbjct 90334607 ATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTC 90334650 >seq14 Length=81409030 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || || ||||| || || || || ||||||||||||||||| || || | ||||| ||| Sbjct 60393871 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATA 60393812 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || || | ||||| || |||||||| || | ||| || | ||||||||| Sbjct 60393811 AAATACTTCTCTTCCGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 60393753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049433450656