Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15 132 7e-26 seq31 120 4e-22 seq13 105 9e-18 seq14 87.8 2e-12 seq26 86.0 9e-12 seq11 86.0 9e-12 >seq15 Length=84800079 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 50570452 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 50570511 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 50570512 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 50570571 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 50570572 TTTCTTACACCAT 50570584 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 50589742 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 50589801 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 50589802 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 50589861 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 50589862 ATGTGTTGTGGTCTTTCAGCC 50589882 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| |||||||| |||||||| || ||||||| ||||| ||||||||||| || Sbjct 50581095 ATATAGCTTCTCAAATTCTTCTCCCCAGACCTCATCCAGACCAGGACATTCATTTGGACA 50581154 Query 77975 CATCAATGACCAGTC 77989 |||||| |||||||| Sbjct 50581155 CATCAAAGACCAGTC 50581169 >seq31 Length=39421065 Score = 120 bits (132), Expect = 4e-22 Identities = 225/326 (69%), Gaps = 15/326 (5%) Strand=Plus/Minus Query 45904 CTTTCAGTACCATCTAGAGATTGCACTTCCTTCAGATCAGGATAATATATACGTTGATAG 45963 |||||||| |||||| | ||| ||||||| | || || ||| |||| |||| | Sbjct 658964 CTTTCAGTGTCATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAGATATCCGTTCACGA 658905 Query 45964 ATTAGTTGAGCTATTCTATCACCCGTATTTATTTCAAATATATCTTTTCCATTATTGATC 46023 || || || || ||| ||||||| | || | |||||| | ||||| ||| ||| | | Sbjct 658904 ATGAGCTGTGCAATTTGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAGATTAAAC 658845 Query 46024 AGAATGACTCCAATTGTCCCTCTATAATCTTCATCTATTACTCCCCCTCCCACATC---G 46080 || | || |||| | ||||||||||||||||||||||| || |||| ||||| | Sbjct 658844 AGGACAACACCAACATTTCCTCTATAATCTTCATCTATTACACCAGCTCCTACATCTTTG 658785 Query 46081 ATACCTTTTAGAGACAGTCCAGATCTAGGAGCTATTCTTCCATA----ACAGAATTTGGG 46136 | |||| | || ||||| | |||||| | ||||||||| ||||| || Sbjct 658784 AAGTGTTTTGCTGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCACCCAGAA----GG 658729 Query 46137 CATAGACATCCGAATATCTGTTTTAATCAATCTCCTTTCTCCA--GGAGGGATAGTATAG 46194 | | ||| |||| || ||||| | ||| | ||||||||| || || | || || Sbjct 658728 AACGGCTATCTGAATGTCAGTTTTCA-CAAGC-ACTTTCTCCATCGGTGGTACTGTGTAA 658671 Query 46195 TCGTACGCACTGTATAAATCATATCC 46220 || || |||||||| | ||||| || Sbjct 658670 TCATAGGCACTGTACAGGTCATAGCC 658645 >seq13 Length=84433108 Score = 105 bits (116), Expect = 9e-18 Identities = 179/257 (70%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| |||||| Sbjct 33720380 TCCAGTGGAACCAAAGCCTCTTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 33720323 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| |||| | | || || || || |||| | | | || Sbjct 33720322 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCAAAC-----TTTTG 33720268 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| |||||||||||||| Sbjct 33720267 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCT 33720208 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| ||||| || || | | || ||||| | |||| Sbjct 33720207 TCATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGA 33720148 Query 46111 GCTATTCTTCCATAACA 46127 || | ||||||||| || Sbjct 33720147 GCCACTCTTCCATAGCA 33720131 >seq14 Length=81409030 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || ||||||| ||| ||||||||||| ||||| || ||| Sbjct 60389120 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 60389061 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 ||| |||||||| || || ||||||| Sbjct 60389060 GTACTGGATTGGAAAGATGACAAATC 60389035 >seq26 Length=51861174 Score = 86.0 bits (94), Expect = 9e-12 Identities = 116/161 (72%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 45904 CTTTCAGTACCATCTAGAGATTGCACTTCCTTCAGATCAGGATAATATATACGTTGATAG 45963 |||||||| |||||| || ||| ||| ||| | || |||| | |||| | || | | Sbjct 41220962 CTTTCAGTGTCATCTAAAGCTTGAACTACCTCAATTTCTGGATGAAATATCCATTCAGAA 41220903 Query 45964 ATTAGTTGAGCTATTCTATCACCCGTATTTATTTCAAATATATCTTTTCCATTATTGATC 46023 || ||||| || |||| ||||||| | || | |||||| | ||||| ||| ||| | | Sbjct 41220902 ATAAGTTGTGCAATTCAATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAAC 41220843 Query 46024 AGAATGACTCCAATTGTCCCTCTATAATCTTCATCTATTAC 46064 |||| | |||| ||||||||||||||||||| || Sbjct 41220842 AGAACAGCACCAACAT---CTCTATAATCTTCATCTATGAC 41220805 >seq11 Length=110256634 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||| || || || | ||||| || || ||||| || || Sbjct 90331005 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 90331064 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| ||| |||||||||||||| ||||||||||| Sbjct 90331065 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 90331099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668522132480