Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15 136 6e-27 seq14 107 3e-18 seq31 91.5 2e-13 seq11 86.0 9e-12 >seq15 Length=84800079 Score = 136 bits (150), Expect = 6e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 50570452 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 50570511 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| |||||||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 50570512 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 50570571 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 50570572 TTTCTTACACCAT 50570584 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| || ||||| ||||| | || || ||||| || || || || || || Sbjct 50594046 CTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGATG 50594105 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| | || || || |||||||| | | Sbjct 50594106 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCAGT 50594165 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 77502 || | |||||| || || | |||| ||||| || || ||||| Sbjct 50594166 TCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACCTTCAT 50594209 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| |||||||| || ||||||| ||||||||||||||| ||||||||||| ||| Sbjct 50581105 TCAAATTCTTCTCCCCAGACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 50581164 Query 76580 CACTC 76584 || || Sbjct 50581165 CAGTC 50581169 >seq14 Length=81409030 Score = 107 bits (118), Expect = 3e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||||| || || | || || ||||| ||||| |||||||| ||||| | || | Sbjct 60398717 CTTCATCTCKGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 60398658 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 60398657 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 60398598 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||||| || Sbjct 60398597 CCACCACCCTCTCCCC 60398582 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| ||||||||||| ||||| || ||| | Sbjct 60389120 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 60389061 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 60389060 GTACTGGATTGGAAAGATGACAAATC 60389035 >seq31 Length=39421065 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 44402 ATCTAGAGATTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGC 44461 ||||| | ||| |||||||||| || || ||| |||| |||| | || || || || Sbjct 658953 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAGATATCCGTTCACGAATGAGCTGTGC 658894 Query 44462 TATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCC 44521 ||| |||||| | || | || ||| | ||||| ||| ||| | || | || || Sbjct 658893 AATTTGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAGATTAAACAGGACAACACC 658834 Query 44522 AATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATC 44566 || || || |||||||||||||||||||| ||| |||| ||||| Sbjct 658833 AACATTTCCTCTATAATCTTCATCTATTACACCAGCTCCTACATC 658789 >seq11 Length=110256634 Score = 86.0 bits (94), Expect = 9e-12 Identities = 102/138 (74%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340 ||| |||||| |||| || | ||| ||| ||| | |||||| |||||||| | Sbjct 90330962 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATCCT 90331021 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 90331022 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 90331081 Query 46401 CATAAAATCAAACGGATT 46418 |||||| ||||| ||||| Sbjct 90331082 CATAAAGTCAAATGGATT 90331099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934114826240