Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq14 104 2e-17 seq11 93.3 4e-14 seq17 86.0 7e-12 seq8 84.2 2e-11 >seq14 Length=81409030 Score = 104 bits (114), Expect = 2e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| | || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 60398717 CTTCATCTCKGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 60398658 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 60398657 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 60398598 Query 23651 CCAC 23654 |||| Sbjct 60398597 CCAC 60398594 >seq11 Length=110256634 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || || ||||| | |||||| ||||| || | || ||||| | ||||||||| || Sbjct 90332805 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 90332864 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || ||||||||||| || || || || || |||||||| Sbjct 90332865 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 90332924 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 90332925 ACCACACGT 90332933 >seq17 Length=76519027 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 8406 TCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAA 8465 ||||||| |||||| ||||||| |||||||||||| |||||||||||| |||||| | Sbjct 66411053 TCCCGGGCTCAAGCCATTCTCCAGCCTCAGCCTCC-GAGTAGCTGGGACTACAGGTGCAC 66410995 Query 8466 GCCACCACGCCAAGCTAA--TTTTTG 8489 |||||| ||| |||||| |||||| Sbjct 66410994 GCCACCGAGCCCAGCTAAGCTTTTTG 66410969 >seq8 Length=116941312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| | | |||||| || |||| |||||||||||| ||||| Sbjct 103730157 GCGCACTGCAGCCCAGAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 103730216 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGA 8502 ||||||| ||||||| |||||| |||| ||| | |||||| ||| | |||| Sbjct 103730217 GCTGGGACTACAGGCGCGCGCCACCGCGCCCGGCTGAATTTTGTTTTTAAATTAGA 103730272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487791404800