Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq19 127 2e-24 seq17 125 7e-24 >seq19 Length=65317831 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || || || ||||| Sbjct 34140960 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 34141019 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || || || | ||| ||||| | ||||| || |||| Sbjct 34141020 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCC 34141079 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | |||||| |||| || Sbjct 34141080 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 34141139 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| |||||||||||||| Sbjct 34141140 ATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 34141177 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || || || ||||| Sbjct 34140732 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 34140791 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || || || | ||| ||||| | ||||| || ||| Sbjct 34140792 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 34140851 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 34140852 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 34140911 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 34140912 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 34140949 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| || || Sbjct 34140491 ACAGCCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATC 34140550 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || |||||||||||||| || || || | ||| ||||| | Sbjct 34140551 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGG 34140610 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| || ||||| ||| ||| || ||||| | | ||||| || | ||| Sbjct 34140611 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTC 34140670 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| |||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 34140671 CACATCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 34140721 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || || || ||||| Sbjct 34141188 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 34141247 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || || || | ||| ||||| | ||||| || ||| Sbjct 34141248 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 34141307 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 34141308 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 34141367 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| || || ||||| |||||||| || Sbjct 34141368 ATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 34141408 >seq17 Length=76519027 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| | || || Sbjct 53720241 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 53720182 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| | Sbjct 53720181 AGCTGTTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 53720122 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || || Sbjct 53720121 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 53720062 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 53720061 CCGGTCAAGGTCTTCACGAAGATCTGCAT 53720033 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| ||||| || ||||||||| | || || Sbjct 53719329 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 53719270 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| | Sbjct 53719269 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 53719210 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || || Sbjct 53719209 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 53719150 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 53719149 CCGGTCAAGGTCTTCACGAAGATCTGCAT 53719121 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| ||||| || ||||||||| | || || Sbjct 53720013 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 53719954 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| | Sbjct 53719953 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 53719894 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || || Sbjct 53719893 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTG 53719834 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 53719833 CCGGTCAAGGTCTTCACGAAGATCTGCAT 53719805 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| || || Sbjct 55474422 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATC 55474363 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | || ||||| |||| || |||||||||||||| || || || | ||| ||||| | Sbjct 55474362 AAAAAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGG 55474303 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| || ||||| ||| ||| || ||||| | | ||||| || | ||| Sbjct 55474302 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTC 55474243 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || || || || ||||| || || ||||| |||||||| || Sbjct 55474242 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 55474189 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| ||||| || |||||||| | || || Sbjct 53719557 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 53719498 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| | Sbjct 53719497 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 53719438 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || || Sbjct 53719437 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 53719378 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 53719377 CCGGTCAAGGTCTTCACGAAGATCTGCAT 53719349 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| ||||| || |||||||| | || || Sbjct 53719785 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 53719726 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| | Sbjct 53719725 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 53719666 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || || Sbjct 53719665 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 53719606 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 53719605 CCGGTCAAGGTCTTCACGAAGATCTGCAT 53719577 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| ||||| || |||||||| | || || Sbjct 53720469 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 53720410 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| | Sbjct 53720409 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 53720350 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || || Sbjct 53720349 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 53720290 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 53720289 CCGGTCAAGGTCTTCACGAAGATCTGCAT 53720261 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| ||||| || |||||||| | || || Sbjct 53720697 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 53720638 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| | Sbjct 53720637 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 53720578 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || || Sbjct 53720577 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTG 53720518 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 53720517 CCGGTCAAGGTCTTCACGAAGATCTGCAT 53720489 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| ||||| || |||||||| | || || Sbjct 53719101 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 53719042 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || ||||| | ||| ||||| | ||| | || || ||| | | || Sbjct 53719041 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGC-CTTCTTTTTCTTG 53718983 Query 41774 -ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||| | | | ||||| || | ||||||||||| || || ||||| Sbjct 53718982 TATCTTCCCCTTGACRTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTT 53718923 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || || ||||| || || |||||||| Sbjct 53718922 ACCAGTGAGGGTCTTCACAAAGATCTGCAT 53718893 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||| ||||| ||||| ||||| || |||||||| | || || Sbjct 53720925 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 53720866 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||||| | Sbjct 53720865 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 53720806 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || || Sbjct 53720805 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 53720746 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 53720745 CCGGTCAAGGTCTTCACGAAGATCTGCAT 53720717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303815078400