Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1152 441 5e-119 seq995 297 1e-75 seq3794 210 2e-49 seq1001 168 5e-37 seq2081 120 2e-22 seq1234 86.0 5e-12 >seq1152 Length=488220 Score = 441 bits (488), Expect = 5e-119 Identities = 431/554 (78%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 270653 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 270712 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 || |||||| |||||||||| | |||||| ||||| || | |||| |||||| | Sbjct 270713 CCAAAGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCAAATTCAATTTCTGGGA 270772 Query 4088 AAAAGGTGTCACATTCAAAGT-CTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 |||| | |||| |||||| | ||||| ||||||| |||||||| ||| ||| || || | Sbjct 270773 AAAACGCATCACTTTCAAAATTCTTGCTTGATCCTTGTCACAAATAGTCTAACATGGCCT 270832 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | |||| ||||| ||||| |||||||| ||||| | |||||| |||||||||||| Sbjct 270833 GGCTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCAGTATCCAAACCATGTCTACT 270892 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 |||||| ||||||||| | ||| |||||| || |||||||| | ||| || || | | Sbjct 270893 TTATTTTTTAATTCTGGATCTTCAATAAGTTCAAAGGCATCATCCAGACTTTTGGCAAGA 270952 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 |||||||||| | |||| | ||||| ||||| | |||||||| | |||||||||| | Sbjct 270953 AAATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCC 271012 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 |||||||| | |||||||| ||||| |||||||| ||||| ||| ||||||||| | | Sbjct 271013 TTTAAAGGTCAATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCACA 271072 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||||||||| || ||| ||||| ||||||||||||||||||| | || |||||| Sbjct 271073 TTCTGTTTACCTTCTACTGAAGAGACTGTAGTCATTCTTTGGAAATACTGGAATTCATTC 271132 Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506 | || |||| || ||| || | ||||| ||||||||||| || | ||||| Sbjct 271133 CTGAGCGGTGGC-----CAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACACAGCG 271187 Query 4507 ACAATGCAGTTTAG 4520 || ||||||||||| Sbjct 271188 ACGATGCAGTTTAG 271201 >seq995 Length=2887361 Score = 297 bits (328), Expect = 1e-75 Identities = 326/431 (76%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || |||||||||||||| ||||||| | |||||| || || ||| ||| ||||| Sbjct 2859196 TTTTCTTATACTTCAAATTTATACTTAACAACTTTCTCCTCCTGGACA---GAAGGAACA 2859252 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098 | ||| |||||| | |||||| || || || | |||| |||| ||||||| | ||| Sbjct 2859253 CCTGGGTATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCTAGAAAAAATGCATCA 2859312 Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158 | |||||| |||||| |||| | | |||||| | | |||||| || ||| | |||| Sbjct 2859313 CTTTCAAATTCTTGCGTGATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCATG 2859372 Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218 || | ||||| | ||||| | || |||| | |||||||||| |||||||| |||| Sbjct 2859373 GCATTCTTATATA--GAACTGCTCCCTGCTATCAA-ACCATGTCTAGTTTATTTGTTAAT 2859429 Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278 |||| || | |||||||| ||| |||||||| | ||| || || | ||||||||||| Sbjct 2859430 ACTGGTTGCTTGGTAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCC 2859489 Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 |||||| | ||||| ||||| | |||||| | ||||||||| ||||||||| || Sbjct 2859490 TGTGGAGGTTCCTTGAGTTCTCTATTGAGAATTATGTTAATTCTGTCTTTTAAAGATCGA 2859549 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||||| || ||||| |||||| ||||| ||||||||||||| ||||||||||||||| Sbjct 2859550 TTCTTTTCTGGAATGTTGAACCACGTCTTCCTACCCATAATCACCAAATTCTGTTTATCT 2859609 Query 4399 GGTACAGAAGA 4409 ||| || || Sbjct 2859610 TCTACTGATGA 2859620 >seq3794 Length=1112998 Score = 210 bits (232), Expect = 2e-49 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || | || |||| Sbjct 442104 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTACTGGACAT 442045 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| || ||||||| | |||||| || || || ||||| || ||||| Sbjct 442044 CAGAAGGAACACCTGTATATTCTGGGAGAAGTTTATACTTTTCCGAATCAATTTGTGGAA 441985 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| |||||| |||||||||||||| |||||||| ||| |||||| || || Sbjct 441984 AAAATGTATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 441925 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||||| | |||||| ||||||||||||| Sbjct 441924 GCTTGTTTATGGATTCCTTGCAGACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 441865 Query 4208 TATT 4211 | || Sbjct 441864 TTTT 441861 >seq1001 Length=605237 Score = 168 bits (186), Expect = 5e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | | || | | |||||||| || ||||| |||||||| || | ||| Sbjct 474771 AGAAAGCTCTTAAGCCAAATGGCGGACAATGGGGGTGACGCAGGTGCAGCCCACGGCCAC 474830 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | ||| | | | || | || || Sbjct 474831 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGGAGGACCAG 474890 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| | Sbjct 474891 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 474950 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || || Sbjct 474951 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 475010 Query 27167 ATTGCG 27172 |||||| Sbjct 475011 ATTGCG 475016 >seq2081 Length=3848183 Score = 120 bits (132), Expect = 2e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||| |||||||||||||| ||||||||| Sbjct 3214532 TTATAAACAGAACTGCCTCCCACTATCCAAACCACGTCTACTTTATTTGTTAATTCTGGA 3214591 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 3214592 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 3214651 Query 4285 AGCTCC 4290 | ||| Sbjct 3214652 GGTTCC 3214657 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 3217938 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 3217997 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 3217998 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 3218046 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| | |||| |||||| |||||||| Sbjct 3211887 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACGCATCACTTTCAAATTCTTGCAT 3211946 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| ||| || || ||| | |||| ||||| || | | ||| Sbjct 3211947 GATCCTTGTCACAAATAGTCTAACATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 3212006 Query 4176 AC 4177 || Sbjct 3212007 AC 3212008 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 3207346 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 3207405 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAA 4057 || |||||| |||||| ||| | |||| Sbjct 3207406 CCAAAGGAACACCTGGATA-TCTGTAAAAA 3207434 >seq1234 Length=3407371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || || |||||||||||||| || ||||| || || || | ||| |||| Sbjct 3266773 CTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTT 3266714 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 || ||||||| | || || || ||| || || || || ||||| |||||||||| Sbjct 3266713 CAGCTCTGTCGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATCCCAAA 3266654 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 3266653 TTTTCACTCC 3266644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361069841963192