Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11 140 4e-28 seq2972 123 3e-23 seq1286 102 1e-16 >seq11 Length=524769 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 426762 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 426703 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 426702 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 426643 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 426642 CTGTTTCTTACACCATA 426626 Score = 105 bits (116), Expect = 8e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| | || || ||||| || || || || || | Sbjct 403054 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 402995 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| | || || | || ||| |||| Sbjct 402994 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 402935 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935 ||| || || || || ||| | |||| |||||||| |||||||||| Sbjct 402934 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACCTTCATAG 402887 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 422011 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 421952 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| | ||| || || | || ||||| || | Sbjct 421951 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 421892 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 421891 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 421834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 415604 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 415545 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 415544 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 415485 Query 54145 CGGTTCCAAGTATAT 54159 ||||||| ||| || Sbjct 415484 AGGTTCCAGGTAAAT 415470 >seq2972 Length=388121 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 372785 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 372726 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 372725 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 372666 Query 24277 C 24277 | Sbjct 372665 C 372665 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 371045 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 370986 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | |||||||||||||| |||||| Sbjct 370985 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 370940 >seq1286 Length=2059838 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 1564877 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1564818 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1564817 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 1564759 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 1555289 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 1555230 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || || |||||||| || ||||||| Sbjct 1555229 TACTGGATTGGAAAGATGACAAATC 1555205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593415892748160