Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq3253 295 8e-75 seq1144 113 5e-20 seq986 86.0 8e-12 >seq3253 Length=864192 Score = 295 bits (326), Expect = 8e-75 Identities = 268/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| || ||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 834858 AGCAGGGTTTCAATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 834917 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 834918 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 834977 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || |||||| ||| ||| | | |||||| || Sbjct 834978 CACACCGGGGACCAGGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTT 835037 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| |||| || |||||||||||||||||||| ||| | | || || ||| Sbjct 835038 GGCGTGGGCAGAACCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 835097 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||| ||||||||||||||||| |||||||| ||| || || ||||||| |||| Sbjct 835098 TCGCACTTTTCGAAGAGCATAAAGTTGGGCTCGAACCCGCCGCCTGGTCGGACGTACTTC 835157 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| |||||||||||| Sbjct 835158 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 835195 Score = 163 bits (180), Expect = 3e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| || ||||| || ||||| ||||| ||||| | ||| |||| Sbjct 835453 CCTGATGCCCAAACTGGTTGCAGGGGAAGCCGAGCACGACCAGGCCCCGGGGTCCAAGGC 835512 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || |||| Sbjct 835513 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 835572 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | || | | | | || || || |||| Sbjct 835573 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGACAGGTTGAAGGGCTCCCCGCCGG 835632 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | ||||| || |||||||||||||| Sbjct 835633 CCAGAGGGCGCGCGGAGAAGGCGTACAC 835660 >seq1144 Length=1800655 Score = 113 bits (124), Expect = 5e-20 Identities = 190/267 (71%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| ||| Sbjct 1161839 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCGCGCCTGC 1161897 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 1161898 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 1161957 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| || | | |||| ||||| Sbjct 1161958 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAC 1162016 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 1162017 GTGCAGCTGCTCTACCCACGGGCCAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 1162075 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 1162076 CAAACTGGACGAGCGCTGCCGGCGCCG 1162102 >seq986 Length=1910458 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 83085 CCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAG---CACCCACCA 83141 |||||||| | ||||| ||||||||||||||| |||| || || | | ||||||| Sbjct 736134 CCAGGGTCAGAAAGCGGCGGCTGTACCTGCGCAAGGGCTCACCATCTGGGCCGCCCACCA 736075 Query 83142 AGAACTT-CTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGC 83200 || ||| || |||| || ||| | ||| |||||||||| ||| |||||| |||| | Sbjct 736074 GGAGCTTCCTGGAAGCTCTGGGCGAAGTCTCTGCGGCACACGGGACACCAGGGGATGAAC 736015 Query 83201 TGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGG 83260 ||| || ||| ||| | | | |||| || ||| |||||||||| | Sbjct 736014 CTGGGATCCTTCATGAGGGCCGTGGCGGCGTCACTGGGCATGCGCAGGGCCTCGC----C 735959 Query 83261 AAGGCGAAGAGCGGATGTGCC 83281 ||||| |||||| | || ||| Sbjct 735958 AAGGCAAAGAGCAGGTGCGCC 735938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608483330527680