Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq833 100 5e-16 >seq833 Length=293620 Score = 100 bits (110), Expect = 5e-16 Identities = 108/139 (78%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| ||||||| || |||||||| |||||||| | || ||||| Sbjct 241518 GCATTTTTTGGAGCCCAGATAAATTCCTTCATCCATGTGATTATGTATTCATACTATGGG 241577 Query 52117 ATGGCCGCTTGTGGTCC-TATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || | || || | |||||||| ||||| ||||||||||| || || || || Sbjct 241578 TTAGCTGCCTTCGGCCCGTGGATTCAGAAA-TATCTCTGGTGGAAACGATACCTGACCAT 241636 Query 52176 AATGCAGTTGGTACAGTTC 52194 ||||| ||||| ||||| Sbjct 241637 GTTGCAGCTGGTA-AGTTC 241654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922721445967680