Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq87 105 8e-18 seq804 102 9e-17 seq3690 100 3e-16 seq1934 100 3e-16 seq1227 100 3e-16 seq1173 98.7 1e-15 seq3199 96.9 4e-15 seq201 95.1 1e-14 seq2243 89.7 6e-13 seq664 89.7 6e-13 seq893 87.8 2e-12 seq890 86.0 7e-12 seq756 86.0 7e-12 seq366 86.0 7e-12 seq475 82.4 9e-11 >seq87 Length=1745107 Score = 105 bits (116), Expect = 8e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||||||||| ||||| || | || || |||||||| || || || Sbjct 605904 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 605963 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||||| || | || |||||| ||| ||| || || | | Sbjct 605964 GATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTT 606023 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||| ||||| || || || || || Sbjct 606024 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 606083 Query 43172 AAAGATTTGCATTTTTAC 43189 ||||| |||||||| || Sbjct 606084 GAAGATCTGCATTTTGAC 606101 >seq804 Length=511346 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 303921 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 303980 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 303981 TACTAACGAGGAGTGA 303996 >seq3690 Length=284185 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 188824 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 188883 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 188884 ATACTAACGAGGA 188896 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 134646 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 134587 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 134586 TACTAACGAGGA 134575 >seq1934 Length=948852 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 873502 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 873561 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 873562 ATACTAACGAGGA 873574 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 948695 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 948754 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 948755 TACTAACGAGGA 948766 >seq1227 Length=586938 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 29806 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 29865 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 29866 TACTAACGAGGAT 29878 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26829 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26888 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 26889 TACTAACGAGGA 26900 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||| |||| ||| |||||| || || ||||| |||| | Sbjct 15379 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 15438 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || ||||| || || || || || | | ||||||||| | || Sbjct 15439 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 15498 Query 43077 ACGCTCTCCTTGTCCATG-ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || ||| | | || || || |||| || | | ||||| || | ||||| Sbjct 15499 ATGC-CTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 15557 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || || || ||||| |||||||| |||||| Sbjct 15558 CTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATT 15606 >seq1173 Length=1175989 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 503708 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 503649 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 503648 TACTAACGAGGA 503637 >seq3199 Length=456099 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 453257 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 453316 Query 60126 TACTACCGAGGAT 60138 || || ||||||| Sbjct 453317 TAGTAACGAGGAT 453329 >seq201 Length=1043613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||||||| |||||||||||||||||||||||| ||| ||||||||| Sbjct 146640 CTCCCCGTCGGGGAATCGAATCCTGGTCTCCCGCGTGACAGGCGGGGATATTCACCACTA 146581 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 146580 TACTAACGAGGA 146569 >seq2243 Length=1906131 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 221725 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 221784 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 221785 TACTAACGAGGA 221796 >seq664 Length=470765 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 35429 CTCCTCGTCGGGGAATCGAACCTCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 35370 Query 60126 TACTACCGAGGA 60137 | || |||||| Sbjct 35369 CATTAACGAGGA 35358 >seq893 Length=565924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||| ||||||||||||||| |||||||||||| ||||| |||| Sbjct 104645 GGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGGGATACTCACCACTGTACTAACGAG 104586 Query 60136 GAT 60138 ||| Sbjct 104585 GAT 104583 >seq890 Length=2278812 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | |||||||||||||||||||||||| | ||||||| || ||||||||||||| Sbjct 223233 CTCCCCATCAGGGAATCGAACCCTGGTCTCCCACATGACAGGTGGGGATACTCACCACTA 223292 Query 60126 TACTACCGAGGA 60137 ||||| ||||| Sbjct 223293 TACTAAAGAGGA 223304 >seq756 Length=716055 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | |||||||| |||||||||||||| | ||||||||||| ||||||| ||||| Sbjct 687202 CTCCCCATCAGGGAATTGAACCCTGGTCTCCTGTGTGACAGGCGGGGATACTCAGCACTA 687143 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 687142 TACTAACGAGGA 687131 >seq366 Length=1125854 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||| | ||||||||| ||||||||||||||||||||||||||| ||||||| |||| Sbjct 709751 CTCCTGGTCAGGGAATCAAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCAGTACTA 709810 Query 60126 TACTA 60130 ||||| Sbjct 709811 TACTA 709815 >seq475 Length=2557553 Score = 82.4 bits (90), Expect = 9e-11 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 60074 CAGGGAATCGAA-CCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 |||||||||||| ||| |||||||| | |||||||||| |||||||||||||||||| | Sbjct 1339504 CAGGGAATCGAAGCCCGGGTCTCCCTCATGACAGGCGGGGATACTCACCACTATACTAAC 1339445 Query 60133 GAGGA 60137 ||||| Sbjct 1339444 GAGGA 1339440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571523171117760