Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1286 107 2e-18 seq2972 98.7 9e-16 seq181 82.4 7e-11 >seq1286 Length=2059838 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | || ||||||||| | | | || |||||||| | Sbjct 1575436 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 1575377 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||| ||||| ||||| |||| Sbjct 1575376 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCCTCTAAGGAAATGTTTT 1575317 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||| ||||| ||||||| || Sbjct 1575316 CCATAAAGTCAAAGGGATTTTCTG 1575293 >seq2972 Length=388121 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | || || ||||| || || || ||||| ||||||||||| || Sbjct 372783 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 372724 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 372723 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 372664 Query 16379 ACCA 16382 |||| Sbjct 372663 ACCA 372660 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| ||| | ||||| || | |||||||| |||||||| || || || | Sbjct 374585 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 374526 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 | || | |||||||||||||||||| ||||| ||||||| Sbjct 374525 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTT 374487 >seq181 Length=972672 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 ||| |||||| || || | || ||||||||| | | | || |||||||| | | Sbjct 408010 TTTTAAAATCTGCATTTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAT 407951 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCC-TTCTAATGAAATATTT 16003 ||||| || |||| || |||||||||||| |||||| ||||| ||||| ||| Sbjct 407950 GCTGATACTCTGAAACTTGTTTCTCAAAGAAATTTCCTTTTCCGCTCTAAGGAAATGTTT 407891 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||| ||||||| ||||||| || Sbjct 407890 TCCATACAATCAAAGGGATTTTCTG 407866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462273852571200