Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq87 100 3e-16 seq11 100 3e-16 seq1484 98.7 9e-16 seq1286 82.4 7e-11 >seq87 Length=1745107 Score = 100 bits (110), Expect = 3e-16 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| || || ||||| ||||| || |||||| | || || || Sbjct 606100 TCAAA-ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 606042 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||| | || || | || ||| ||||| ||| | || ||| Sbjct 606041 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCC 605982 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | ||| Sbjct 605981 GACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 605922 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || ||||| ||||| || || ||||| || | |||||||| |||| Sbjct 605921 TACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGTA 605867 >seq11 Length=524769 Score = 100 bits (110), Expect = 3e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || || || Sbjct 418849 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 418790 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTG-CACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || ||||||||| || | || || ||||| ||||||||||| ||||| || Sbjct 418789 CCCAAGTTCTGCTGGTTGCTCTTCCTTTTTACAGGAATCTTTGTAGAGCATATACGGGGT 418730 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 418729 ACCTGTCTCTGTCTGAGACTCAATGATGGC 418700 >seq1484 Length=2418587 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCAC-CGTCGACGTTGAACC 31248 || ||||| |||||| | ||||| | || || || || ||||| | |||| ||||| || Sbjct 499714 AAGATGCAGATTTTCATGAAGACCCGGATGGGGAAGACCATCACTCTTCGAGGTTGAGCC 499655 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | || |||| || || | || ||| |||||||| | || || || Sbjct 499654 CTCGGATACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 499595 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 |||||| | || || || |||||||| || ||||||| | ||| ||| || || | Sbjct 499594 CCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACT 499536 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 | ||||| ||||| || |||||||||||||| || | ||||| Sbjct 499535 ACAACATGCAAAAGGAGTCGACTCTTCATCTAGTGTTGAGACT 499493 >seq1286 Length=2059838 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 57526 AGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACA 57585 ||| | | ||| |||||||||| ||||| || | || || ||||||||||| ||||| | Sbjct 1555193 AGAGTTCTCGTCGATTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATA 1555252 Query 57586 AAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 |||||||| | ||||| || ||||| | ||||| ||| Sbjct 1555253 AAAAGGCACAGGCATCCTTCTGGACAGCAGAAGAGGTA 1555290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445536874880640