Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1234 136 3e-27 seq1152 102 7e-17 >seq1234 Length=3407371 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| ||||||| || || || |||||||||||||| ||||| || | Sbjct 3269137 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGG 3269078 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| |||||||| ||||||||||| |||||| Sbjct 3269077 GCACACCCAGGCCCATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATTCA 3269018 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | |||| || || ||||| ||||| Sbjct 3269017 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCAT 3268975 >seq1152 Length=488220 Score = 102 bits (112), Expect = 7e-17 Identities = 190/276 (69%), Gaps = 10/276 (4%) Strand=Plus/Plus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTT-TGT 2948 || ||||||||| | ||||| | | ||| ||| ||| || || | ||||| || || Sbjct 270850 CTTATAAACAGAACTGCCTCCCAGTATCCAAACCATGTCTACTTTATTTTTTAATTCTGG 270909 Query 2949 ATTGTCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 || || ||| | | ||| ||||| || || || | || ||||| || ||||| | | Sbjct 270910 ATCTTCAATA-AGTTCAAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTG 270968 Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068 | ||||| | |||||| || | || ||||||||||||| | | ||| | |||| Sbjct 270969 GAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCAATTCT 271028 Query 3069 TTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128 | || || ||||| ||||| || | | | |||||| |||||||||| || |||| | | Sbjct 271029 TCTCTGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCACATTCTGTTTACCTTCTA 271088 Query 3129 CCGATGGCGTAGAC----GTCATTTTCTGAAAATAC 3160 | || | |||| |||||| | || |||||| Sbjct 271089 CTGAAG----AGACTGTAGTCATTCTTTGGAAATAC 271120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427561244684160