Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2972 134 2e-26 seq11 131 2e-25 seq1286 104 3e-17 seq271 93.3 6e-14 >seq2972 Length=388121 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| ||||| |||||||||||||| || ||||| || || || || | Sbjct 372785 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 372726 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 372725 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 372666 Query 50102 CAAC 50105 | || Sbjct 372665 CTAC 372662 Score = 105 bits (116), Expect = 1e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 371045 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 370986 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | |||||||||||||| |||||| Sbjct 370985 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 370940 >seq11 Length=524769 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 426762 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 426703 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||||||||| || ||||||||||| || || ||||| || || | | |||| Sbjct 426702 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 426643 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 426642 CTGTTTCTTACACCATA 426626 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 415600 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 415541 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||| Sbjct 415540 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 415481 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 415480 TCCAGGTAAATAGC 415467 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| | ||||| || || || || ||||| ||| Sbjct 422009 TAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAA 421950 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| | ||| || ||| | || ||||| || || Sbjct 421949 TAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGTAC 421890 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 421889 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 421834 >seq1286 Length=2059838 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || || || |||||||| |||||||| ||||| || || | || || Sbjct 1564877 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1564818 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| ||||||||||| Sbjct 1564817 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGCC 1564758 Query 50104 AC 50105 || Sbjct 1564757 AC 1564756 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 1555290 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 1555231 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 || |||||||| || || ||||||| Sbjct 1555230 GTACTGGATTGGAAAGATGACAAATC 1555205 >seq271 Length=1806658 Score = 93.3 bits (102), Expect = 6e-14 Identities = 174/255 (68%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||||| | ||| |||||||| Sbjct 31385 TCCAGTGGAACCAAAGCCTCTTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 31326 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||| ||| |||| |||| | || ||||| || |||| | || || || Sbjct 31325 TATTTCTGGGTAAAATATCCGTTCACGAATGAGCTGTGCAATTCAAACTT-----TTGAC 31271 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | || || ||||||||||| Sbjct 31270 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCTTC 31211 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 ||||| |||||| |||||| ||| || | || | || || ||||| | |||||| Sbjct 31210 ATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGAGC 31151 Query 47940 TATTCTACCATAGCA 47954 | ||| |||||||| Sbjct 31150 CACTCTTCCATAGCA 31136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717898963394880