Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1286 114 1e-20 >seq1286 Length=2059838 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || ||||| || ||||| || || || ||||| || |||| ||| | Sbjct 1564879 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1564820 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 1564819 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 1564760 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 1564759 CCACCACCCTTTCCCC 1564744 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 12970 TTCTAGTAA-CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCA 13028 |||| |||| |||||||||||| |||||||| || ||||||||||| | | |||| |||| Sbjct 1570348 TTCT-GTAAGCAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAGAACACAATTCA 1570290 Query 13029 TTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 |||| || | || |||| |||||||||||||| Sbjct 1570289 TTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 1570253 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859 |||||||||| ||||| | || |||| ||| || || | || |||||| | | Sbjct 1575436 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTT-TCTGCCATAACTGCAAAA 1575378 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||||| ||| ||||| || ||||||||||| ||||| ||||| ||| Sbjct 1575377 CGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCCTCTAAGGAAATGTTT 1575318 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 |||||||| || || ||||||| Sbjct 1575317 TCCATAAAGTCAAAGGGATTTT 1575296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430766034983184