Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4133 147 5e-30 seq3059 147 5e-30 seq1484 140 7e-28 seq87 138 3e-27 seq812 127 5e-24 seq601 123 6e-23 seq1286 120 7e-22 seq347 116 9e-21 seq833 104 5e-17 seq271 87.8 4e-12 >seq4133 Length=1091651 Score = 147 bits (162), Expect = 5e-30 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || || || | || || |||||||| || || || ||||| | Sbjct 881309 CCCCTC--AGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 881252 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 |||| | || ||||| || || || || ||||| || |||||||| || ||||| || | Sbjct 881251 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAA 881192 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | ||||| |||||||| ||||| || || || || || | ||| || ||||| || |||| Sbjct 881191 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTAGGCTCCACCT 881132 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || ||||| | || || || || || || |||||||||||| Sbjct 881131 CCAGGGTGATGGTCTTGCGGGTCAGGGTCTTCACGAAGATCTGCATTTTG 881082 >seq3059 Length=469066 Score = 147 bits (162), Expect = 5e-30 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || || || | || || |||||||| || || || ||||| | Sbjct 20098 CCCCTC--AGACGAAGGACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAA 20155 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 |||| | || ||||| || || || || ||||| || |||||||| || ||||| || | Sbjct 20156 GAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAA 20215 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | ||||| |||||||| ||||| || || || || || | ||| || || || || |||| Sbjct 20216 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 20275 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || ||||| || || || || || || || |||||||||||| Sbjct 20276 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 20325 >seq1484 Length=2418587 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || || || || |||||||| | ||| | || ||||| Sbjct 499502 ACTAGATGAAGAGTCGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATCTTCC 499561 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||||||| |||||||| Sbjct 499562 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 499621 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTC-TAGTGTAATAGTCTT 104529 ||||| || |||||||||||||| ||||| || || ||||| || || || ||||| Sbjct 499622 ATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAAGAGTGATGGTCTT 499681 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | | || || | || |||||||| ||| Sbjct 499682 CCCCATCCGGGTCTTCATGAAAATCTGCATCTTG 499715 >seq87 Length=1745107 Score = 138 bits (152), Expect = 3e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || |||||||| || || || ||| Sbjct 605866 ATACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 605925 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || ||||| || |||||||| || || || Sbjct 605926 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGG 605985 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||| ||||| || || || || || | ||| || || || || Sbjct 605986 GGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCC 606045 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || ||||| || || |||||||||||| Sbjct 606046 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTTG 606099 >seq812 Length=3055148 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| || |||| Sbjct 659705 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTTC 659764 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||| ||| |||| ||| Sbjct 659765 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCCTTATTCTGG 659824 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || ||||| || || || | || Sbjct 659825 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTGATGATGTTC 659884 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || || || || || |||||||| ||| Sbjct 659885 CCTATTAGAGTCTTCACGAAAATCTGCATCTTG 659917 >seq601 Length=205583 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| || || || || || ||||| || |||||||| | ||| | || |||| Sbjct 193162 ACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTTC 193103 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || | || |||||||| |||||||| |||||||| Sbjct 193102 AGTTGCTTGCCAGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 193043 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 | ||| | ||||||||||||| |||||| || || |||| || || || ||||| Sbjct 193042 ACCTTGACCTTTACATTTTCTATGGTATCCGAGGGCTCGACCT-GAGAGTGATGGTCTTC 192984 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCA 104558 || | || || | || || ||||||| Sbjct 192983 CCCATCAGCGTCTCCACGAAAATCTGCA 192956 >seq1286 Length=2059838 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||||||||||||||| || ||||| ||||| |||||||| Sbjct 1564744 GGGGAAAGGGTGGTGGCCTTTGCCGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 1564803 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || | Sbjct 1564804 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTC 1564863 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 1564864 ATCAGCAGAGATGAAG 1564879 >seq347 Length=1818929 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104385 AGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT 104444 ||||||| | ||| | || ||||| ||||| || |||||||| || || || || || | Sbjct 1569241 AGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGT 1569300 Query 104445 CAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG 104504 ||||||| |||||||| |||||||| ||||| || |||||||||||| ||||| | Sbjct 1569301 CAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGG 1569360 Query 104505 GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || |||| | || || ||||| | || || || || | || |||||||| ||| Sbjct 1569361 GCTCCACCTTGACAGTGATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTTG 1569419 >seq833 Length=293620 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 240199 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 240258 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | |||||| || || |||||||| | ||| |||||||| ||| Sbjct 240259 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTTACGTTG 240318 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| | ||||||||||| Sbjct 240319 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 240353 >seq271 Length=1806658 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 65771 AAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATC 65830 ||||| ||| || || |||||||| | | | |||||||| |||||||| ||| ||| Sbjct 31267 AAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCTTCATC 31208 Query 65831 TATAACACCAGCACCTACATCTATAAAGTAATTATAC-GCTAATCCAGATCGGGGAGCTA 65889 ||| |||||||| ||||||||||| ||| || | | || || ||||| || ||||| | Sbjct 31207 TATGACACCAGCTCCTACATCTATGAAG-GGTTCTGCTGCCAAGCCAGAACGAGGAGCCA 31149 Query 65890 TTCTACCATA 65899 ||| ||||| Sbjct 31148 CTCTTCCATA 31139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150790723587936