Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq494 118 9e-22 >seq494 Length=1389556 Score = 118 bits (130), Expect = 9e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| || ||||| ||||| ||||| |||||||| |||||| |||| Sbjct 769885 GGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAAGAGGTGATGCCAAAGGCT 769944 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || ||||| || ||||| || || ||||| || || ||||| || ||||||||||| Sbjct 769945 GAGAACCACGGGCCTGACATCAAGGAGCACGTGAACTCGCTGGGGGAGAAGCTGAAGACC 770004 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | | || || ||||| ||||| Sbjct 770005 CTCCGGCTCCGGCTGCGGCGCTG 770027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 127315 CACCGCTTTCTCCCGTGCGAGAACAAGAGCAAGGCGGTGGAAAAGGTGAAGAGAGTGTTC 127374 || |||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 771038 CATCGCTTTCTGCCCTGCGAAAACAAGAGCAAGGCGGTGGAGAAGGTGAAGAGAGTCTTC 771097 Query 127375 AGCGAG 127380 || ||| Sbjct 771098 AGTGAG 771103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429838500864704