Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq552 86.0 3e-12 seq3690 84.2 1e-11 seq1960 82.4 4e-11 seq1744 82.4 4e-11 seq804 82.4 4e-11 >seq552 Length=702637 Score = 86.0 bits (94), Expect = 3e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||| | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 84345 AAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 84286 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 |||||||||||| |||| || Sbjct 84285 CAACTGAGCTAACCGGCCCTC 84265 >seq3690 Length=284185 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 9591 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 9532 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 9531 CTGAGCTAACCGGCC 9517 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 238699 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 238640 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 238639 CTGAGCTAACCGGCC 238625 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 7786 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 7845 Query 11528 CC 11529 || Sbjct 7846 CC 7847 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 25224 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 25283 Query 11528 CC 11529 || Sbjct 25284 CC 25285 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 224764 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 224705 Query 11528 CC 11529 || Sbjct 224704 CC 224703 >seq1960 Length=493644 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 328906 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 328965 Query 11528 CC 11529 || Sbjct 328966 CC 328967 >seq1744 Length=273054 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 22856 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 22797 Query 11528 CC 11529 || Sbjct 22796 CC 22795 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 237688 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 237747 Query 11528 CC 11529 || Sbjct 237748 CC 237749 >seq804 Length=511346 Score = 82.4 bits (90), Expect = 4e-11 Identities = 60/69 (87%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 287896 GGCTCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 287837 Query 11528 CC-GTCGAC 11535 || |||||| Sbjct 287836 CCAGTCGAC 287828 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 309053 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 309112 Query 11528 CC 11529 || Sbjct 309113 CC 309114 Lambda K H 0.639 0.410 0.922 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261359924226592