Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1517 165 1e-35 >seq1517 Length=2674573 Score = 165 bits (182), Expect = 1e-35 Identities = 221/305 (72%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| | || || ||||| ||||| ||||| || |||| |||||||| || | Sbjct 111555 GAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 111614 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | |||| ||| ||| || || ||||| ||||| ||||| || |||||||| Sbjct 111615 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCGAAAGTGCTAGGCTTCCAGTACT 111674 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCT-CG 8851 | || ||||| || || |||| || ||||| ||||| || || || || |||| | Sbjct 111675 CGGGAGAGCATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCC-AGCTTCT 111733 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||| |||| || |||||||||| ||||||||||| || |||| | ||| || Sbjct 111734 ACCATGGTCTCCCCAAAGATGGCGTCTGGACGGGGCTTCTCTACCAGAAGGGCGGGATAA 111793 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 ||||||| || || |||||||| || || || | || ||||| |||||||| ||| Sbjct 111794 AACTCCATGGCATCTATGTCTCCATAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCT 111853 Query 8972 CCTGT 8976 ||||| Sbjct 111854 CCTGT 111858 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || || | |||||||||||| ||| |||| || ||||| |||||| Sbjct 113240 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 113299 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || || |||||||| |||||||||||||| ||||| Sbjct 113300 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 113359 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | || | ||| || || | || || |||||||| | Sbjct 113360 ACTTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGCGGGTAGATCATTTCG 113419 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || | ||| |||| Sbjct 113420 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 113468 Score = 109 bits (120), Expect = 8e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 114254 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 114313 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 114314 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 114373 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGATT 10207 ||| |||| | || | ||||| ||||| |||||| | | || ||| || || | Sbjct 114374 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAGCTC 114433 Query 10208 TTT 10210 ||| Sbjct 114434 TTT 114436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708159980580480