Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2590 118 1e-21 seq2626 114 1e-20 seq3282 96.9 4e-15 seq2972 82.4 8e-11 >seq2590 Length=115759 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||||||| ||||||||| || | | Sbjct 52036 AGCTCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTCCCACTGAAGTACAGGATATCTGA 51977 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| | ||| ||||||||||| ||||| || |||| |||||||||||| Sbjct 51976 CTCAATGTCCAATTCTCTGAGTCTTCAGAAAAATAAAAACACTTATTCCCAAATCCAATC 51917 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || ||||| Sbjct 51916 CATCCTTTTGGGCAGGTGACATA 51894 >seq2626 Length=182972 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||||||| |||| |||| |||| | Sbjct 176114 AGCTCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTCCCACTGAAATACAGGATGTCTGA 176055 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||||| ||||||||||| ||||| || ||| |||||||||||| Sbjct 176054 CTGAATGTCCAATTCTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATC 175995 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| | ||||| Sbjct 175994 CATCCTTTTGGGCAGCTGACATA 175972 Score = 102 bits (112), Expect = 9e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | |||| ||| ||||||||||||| ||||| | | |||||||| Sbjct 144713 GTTTCAAACTGAGCAAGGACAGCTTCCAATGAAGTACAGAATGTCTGACTGAATGTCCAG 144654 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||| ||||| ||||| ||||| |||||| ||||||||| |||||||| |||| | Sbjct 144653 TTCCTTGTGTCTTCCGAAAAATAAAAACATTTACTTCCAAATCCTATCCATCCTTTTGAG 144594 Query 130785 CAAGTAACATA 130795 || | |||||| Sbjct 144593 CAGGGAACATA 144583 >seq3282 Length=253609 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||| ||| | ||||||| || | | Sbjct 34138 AGCTCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTTCCAGTAAAGTACAGGATATCTGA 34079 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | | ||||||||| | || ||||||||||| ||||| || |||| |||||||||||| Sbjct 34078 CTCAGTGTCCAATTCTCCGACTCTTCAGAAAAATAAAAACACTTATTCCCAAATCCAATC 34019 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| | ||||| Sbjct 34018 CATCCTTTTGGGCAGTTGACATA 33996 >seq2972 Length=388121 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 21168 TTGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 374585 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 374526 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 374525 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 374486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531626924278080