Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1227 82.4 7e-11 >seq1227 Length=586938 Score = 82.4 bits (90), Expect = 7e-11 Identities = 169/249 (68%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 26750 TACTTTTTAGT--CAA-ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGAT 26806 |||||||| || ||| | | |||||| | ||||| || || | ||||| ||| | || Sbjct 15627 TACTTTTTTGTTCCAACAGACAATGCAGATCTTTGTGAAGACCCTCACTGGTAAAACCAT 15568 Query 26807 CACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAA 26866 ||| | || | || | | |||||||||||| | ||||| ||||| || || Sbjct 15567 CACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGGGAAGATACAAGAAAA 15508 Query 26867 AGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGA 26926 |||||| || || || || || || || | || | | ||| ||||| || ||||||| Sbjct 15507 AGAAGGCATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGG 15448 Query 26927 TAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 | | | | ||||| ||||| || || || || ||| | || |||||||| | || Sbjct 15447 GCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCT 15388 Query 26987 TAGAGGAGG 26995 ||||| || Sbjct 15387 CAGAGGTGG 15379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478415936730240