Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11 86.0 2e-11 >seq11 Length=524769 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || |||||| Sbjct 418682 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTATATG 418741 Query 364171 TTGTACAAAGATTCGTG-CAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCA 364229 | ||||||||||| || || | ||| |||||||||| || | || || || | Sbjct 418742 CTCTACAAAGATTCCTGTAAAAAGGAAGAGCAACCAGCAGAACTTGGGAACCATCAAATG 418801 Query 364230 GAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 418802 CAGCAACCTGTGCACAGAAATAGTAGAGTATACC 418835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302665725812144