Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq87 84.2 2e-11 seq1227 82.4 7e-11 >seq87 Length=1745107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || || || | || ||| | || || ||| | Sbjct 606099 CAAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCC 606040 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | || || ||||| || || || ||||| || ||||| Sbjct 606039 CAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGA 605980 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| || || | | ||||||||| || ||||||| | | | | ||||| Sbjct 605979 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 605920 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || ||||| || || Sbjct 605919 CAACATCCAGAAAGAGTCGAC 605899 >seq1227 Length=586938 Score = 82.4 bits (90), Expect = 7e-11 Identities = 127/179 (71%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 23972 TACTTTTTAG--CCAA-ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGAT 24028 |||||||| | |||| | | |||||| | ||||| || || | ||||| ||| | || Sbjct 15627 TACTTTTTTGTTCCAACAGACAATGCAGATCTTTGTGAAGACCCTCACTGGTAAAACCAT 15568 Query 24029 TACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAA 24088 || | || || ||| ||| |||||||||||| | ||||| ||||| || || Sbjct 15567 CACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGGGAAGATACAAGAAAA 15508 Query 24089 AGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||||||| || || || || ||||| |||| | | ||| || || || ||||||| Sbjct 15507 AGAAGGCATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATG 15449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429720160304760