Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq527 127 1e-24 seq1237 122 6e-23 seq2102 118 7e-22 seq799 91.5 1e-13 seq3288 89.7 3e-13 seq2036 86.0 4e-12 seq87 86.0 4e-12 seq3059 82.4 5e-11 seq167 82.4 5e-11 >seq527 Length=539611 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 269364 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 269305 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 269304 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 269270 >seq1237 Length=1420352 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 588944 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 588885 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| |||||||||||||||||| Sbjct 588884 TCATCCATTCATGCGCATCACTAATTAGATGACGA 588850 >seq2102 Length=403632 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||| | Sbjct 318875 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCCT 318816 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| |||||||||||||||||| Sbjct 318815 TCATCCATTCATGCGCATCACTAATTAGATGACGA 318781 >seq799 Length=4553979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||| |||||||||||||||||||| | |||||||| ||| | | |||||| | Sbjct 3936746 AAGCCCATTCCCTTGGCTGTGGTTTCGATGGATAGTAGGTAGAGACAGTGAGAATCTCTT 3936687 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||| | ||||||||||||||||| Sbjct 3936686 TCATCCATTCATGTGAGTCACTAATTAGATGAC 3936654 >seq3288 Length=111447 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||| || |||||||||||| |||||||||| | Sbjct 19153 CTCTCTCTTCAAAGTTCTTTTCAACTTTTTCTTACGGTACTTGTTGACTATCGGTCTTGT 19094 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 19093 GCCGGTATTTAGCCTTA 19077 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/93 (80%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||||||| |||||||||||||||| || |||||||| ||| | || ||||| || Sbjct 22205 AAGCCCGTTTCCTTGGCTGTGGTTTCCCTGGATAGTAGGTAGGAACAGTGGAAATCTTGT 22146 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | || |||||| ||||||||||||||| || Sbjct 22145 TCATTTACTCATGCACGTCACTAATTAGATAAC 22113 >seq2036 Length=1548885 Score = 86.0 bits (94), Expect = 4e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||| |||||||||| | |||||||||| | |||||||| | Sbjct 5315 CTCTCTCTTCAAAGTTCTTTT-AACTTTCCCTTATGGTACTTGTTGACAATCGGTCTTGT 5373 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 5374 GTTGGTATTTAGCCTTA 5390 >seq87 Length=1745107 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| ||| | |||| || || || ||| || || || |||||||||| Sbjct 605867 TACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 605926 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || |||||||| || || | || || |||| || Sbjct 605927 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGG 605986 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || || ||| || || |||||| |||| || || || | || | Sbjct 605987 GAATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 606046 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || || |||| |||||||||||| |||||||| || Sbjct 606047 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 606098 >seq3059 Length=469066 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || ||||| ||| || || || ||||||||||| Sbjct 20095 CCACCCCTCAGACGAAGGACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGAA 20154 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || |||||||| || || | || || || | ||| Sbjct 20155 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 20214 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || || |||||| |||| || || || | || || Sbjct 20215 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 20274 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||| ||| |||||||| |||||||| || Sbjct 20275 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 20324 >seq167 Length=3179800 Score = 82.4 bits (90), Expect = 5e-11 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GTA---ATCTCGT 25956 |||| ||||||||||||||| ||||||| |||||| |||||| ||| ||||| | Sbjct 1088447 AAGCTTGTTCCCTTGGCTGTGATTTCGCTGCGTAGTAGGTAGGGGCAGTAAGGATCTCAT 1088388 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| | ||||| | ||||||||||||||| || Sbjct 1088387 TCATCCATACATGCACATCACTAATTAGATGATGA 1088353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334779047294552