Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq87 118 9e-22 seq3059 116 3e-21 seq4133 107 2e-18 seq2985 89.7 4e-13 >seq87 Length=1745107 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | ||||||||| | | Sbjct 605867 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 605808 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 605807 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 605748 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 605747 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 605688 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 605687 ATCCAGAAAGAGTCGACCCTGCA 605665 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || ||||||| || ||||||| | || |||||| | Sbjct 606096 AATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 606037 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| ||||| || ||| || || || || ||||| || ||||| Sbjct 606036 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCA 605977 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 605976 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 605917 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 605916 CATCCAGAAAGAGTCGACCCTGCA 605893 >seq3059 Length=469066 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||||| || ||||||| | || |||||| | Sbjct 20322 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 20263 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 20262 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 20203 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 20202 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 20143 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 20142 CATCCAGAAAGAGTCGACTCTGCA 20119 >seq4133 Length=1091651 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||| | || ||||||| | || |||||| | Sbjct 881085 AATGCAGATCTTCGTGAAGACCCTGACCCGCAAGACCATCACCCTGGAGGTGGAGCCTAG 881144 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 881145 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 881204 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 881205 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 881264 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 881265 CATCCAGAAAGAGTCGACCCTGCA 881288 >seq2985 Length=258859 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 227362 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 227421 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || || || ||||| |||||||| Sbjct 227422 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAG 227481 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 ||| || | || ||||||||||| || | ||||||| Sbjct 227482 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATG 227518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433110457427480