Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2972 87.8 3e-12 seq1286 87.8 3e-12 >seq2972 Length=388121 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || || || ||||||||||| || || | || || || || |||| Sbjct 372660 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCT 372719 Query 42766 GGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| | ||| | |||||| || ||||| || || || ||||| || ||||| Sbjct 372720 GGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 372778 Query 42825 GACGAGG 42831 ||||||| Sbjct 372779 GACGAGG 372785 >seq1286 Length=2059838 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| |||| || || || || ||||||||||| | || || Sbjct 1564744 GGGGAAAGGGTGGTGGCCTTTGCCGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 1564803 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| | | ||| || ||||| |||||||| || || || || || Sbjct 1564804 GCTATATTCTGGCTAAAGAAAAGAGGACTC-ATGCCTGGACTCACTTTTTCCAATGAGCT 1564862 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 1564863 CATCAGCAGAGATGA 1564877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943852959745920