Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1517 161 1e-34 seq823 111 2e-19 >seq1517 Length=2674573 Score = 161 bits (178), Expect = 1e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 |||||| | | || || ||||||||||| || |||||||| || || || ||||| || Sbjct 113227 GATTAGCCTGCTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAG 113286 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 ||||| || || ||||||||||| | |||||| |||||||| |||||||| | ||| || Sbjct 113287 CACATCACACACTCTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGG 113346 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 ||| | |||||| ||||| | ||||| ||||| || | || || || | |||| Sbjct 113347 CACCAGACCAAAGACTTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGCGG 113406 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | ||||| || |||||||| ||||| |||||||| || || | ||| Sbjct 113407 GTAGATCATTTCGACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAAT 113463 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||| |||||||| | ||| | |||||||| |||||||| | | ||| ||| | || Sbjct 114254 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 114313 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || ||||| || | || || || |||||||| || |||||||||||||| Sbjct 114314 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 114373 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || ||||| | ||||| | | | ||||| || || Sbjct 114374 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAG 114430 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| ||| || ||||| |||| ||| ||| Sbjct 115086 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAGCTCTGGTA 115145 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 ||||| || || || ||||| ||||||||||| || |||| || | | || || Sbjct 115146 TAATAAGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 115205 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 115206 GGCGGACTCTCAATCA 115221 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/177 (71%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 |||| | ||||||| || | ||||||| |||| || || || ||||| || || || | Sbjct 112762 GAAAGACGTCAGGCAGAAGGGGATGCCAGTGGTACAGCGTGTTAAACTCAGCAGCAATAC 112821 Query 9605 GGTTCTGGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAA 9662 ||||||||||||| || | ||| ||| || | ||| |||||||| | || | ||| Sbjct 112822 GGTTCTGGTACTGGAACTGTTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAA 112879 Query 9663 GTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||| || || || | ||||| || || | | || | ||| ||||| ||||| || Sbjct 112880 GTGATAGCCACTCAAGTGCTGTACGTAGTCTTCAATCACAATCTTAATAGTTTCTCC 112936 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 9963 AACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGT 10022 ||||||||| ||||| || ||||||||||| || |||||||||||||| |||| || | Sbjct 113575 AACCTGATATTTCATTTTTCCATCCTTGAAAAGGCGCAGCTTATGCTGTCTCTCTAAAGA 113634 Query 10023 TTCGCCGTAGATGTGACTGAGATCGACCT 10051 ||| || || |||||||| | || |||| Sbjct 113635 TTCACCATAAATGTGACTTAAGTCCACCT 113663 >seq823 Length=287446 Score = 111 bits (122), Expect = 2e-19 Identities = 175/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || || || ||||| || || || ||||| | ||||||||| Sbjct 261746 GTGGCCGTCTTGACAAGGTTGAAGCCCACGTCACCACCAAATGTGCTTGCCTTCCAGTAC 261687 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| |||| | | ||| || || | |||||| |||||||||| || Sbjct 261686 TCTGGAGAACAGATGGGGTTCCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCCATTTCT 261627 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTG-TA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | || Sbjct 261626 ATCATACTCTCCCCAAAGATGGAGTTCGGATGGCACTTCTCAA-GAAGTAGCCCCAGATA 261568 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | ||| | || ||| ||||| || | |||||||| || || ||||||||||| Sbjct 261567 GAATTCCAAAGCATTGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 261508 Query 9172 ACCTACAA 9179 ||| ||| Sbjct 261507 CCCTGCAA 261500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723355352452800