Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2008 154 6e-32 seq1484 98.7 4e-15 seq626 96.9 1e-14 seq175 95.1 5e-14 >seq2008 Length=369338 Score = 154 bits (170), Expect = 6e-32 Identities = 349/524 (67%), Gaps = 3/524 (1%) Strand=Plus/Minus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| || | ||||| || | |||||| |||||| | || ||| | | | | ||||| | Sbjct 366755 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATAGGCAGAAAATTTAATGATCCT 366696 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 || ||| ||| | ||| | | ||| | ||| | ||| || ||| |||||| Sbjct 366695 GTCGTGCAATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAATGAAGGAGGCAAGCCC 366636 Query 451202 TATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCT 451261 | | || |||||||| |||| ||| ||||| |||||||||||| || ||| Sbjct 366635 AAGGTAATGGTGTCCTATAAAGGGGAAAAGAAAGCTTTTTATCCTGAAGAAATCTCTTCT 366576 Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 ||||| || ||||| ||||| || || || || | | | || | | || || || Sbjct 366575 ATGGTACTAACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCTACACTGTCACCAAT 366516 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| || || || |||||||| | ||||| || || || || ||||| Sbjct 366515 GCTGTGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCG 366456 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||| || ||| | ||||| || ||||||| |||||||| || || ||||| | Sbjct 366455 GGTGTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCATT 366396 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| ||| ||| | || | ||| | || | || | |||||| | Sbjct 366395 GCCTATGGCTTAGATAAAGC---AGGTCAGGGAGAGCGACATGTCTTGATCTTTGATCTG 366339 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 |||||||| || |||| || || || | || || |||||| | ||||| || ||| Sbjct 366338 GGTGGAGGCACATTTGATGTGTCCGTCCTGACCATAGATGATGGGATTTTTGAGGTTAAG 366279 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||| || || || | || || || ||| |||| || Sbjct 366278 GCCACAGCTGGGGACACCCACTTGGGTGGAGAGGATTTTGACAA 366235 >seq1484 Length=2418587 Score = 98.7 bits (108), Expect = 4e-15 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTT-GATGTTGAATCATC 391108 ||| | |||||| | || || | || || || || || |||||| || ||||| | || Sbjct 499711 ATGCAGATTTTCATGAAGACCCGGATGGGGAAGACCATCACTCTTCGAGGTTGAGCCCTC 499652 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| | ||| | | || || || || ||||||||||||||||||||||| || Sbjct 499651 GGATACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 499592 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 499591 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAA 499532 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || ||||| |||| || ||||| Sbjct 499531 CATGCAAAAGGAGTCGACTCTTCATCTAGTGTTGAGACT 499493 >seq626 Length=3061481 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 1018720 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 1018779 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| | ||||| | | || || ||||| || Sbjct 1018780 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 1018832 >seq175 Length=2792250 Score = 95.1 bits (104), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 1289305 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 1289248 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 1289247 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 1289188 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 1289187 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 1289128 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| || || | | Sbjct 1289127 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 1289068 Query 96287 TAGGG 96291 || || Sbjct 1289067 TATGG 1289063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974675670160736