Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2008 192 4e-43 seq906 147 2e-29 seq1033 132 4e-25 seq1122 104 2e-16 >seq2008 Length=369338 Score = 192 bits (212), Expect = 4e-43 Identities = 916/1435 (64%), Gaps = 28/1435 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 || || ||||| ||||||||||||||||| | ||||| || || ||||| ||||| || Sbjct 365470 GCTGTGACATTGAGAATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGAGGCACT 365529 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || || | ||||| ||||| || || || ||| ||||| || || || | Sbjct 365530 CCCCTGGGTGCAGGAGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGA 365589 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | | || ||||| | | ||||| || | | ||||| |||||||| Sbjct 365590 GTCATGGCCCTCTCGCCCTCATACACCTGGATCAGCACGCCCGGCTGATTGTCTGAATAG 365649 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAAT-AATATTGG 517496 || || || | |||| | | | | || || || | ||| | | || |||| | Sbjct 365650 GTGGTGAAAA-TCTGTGTCTGCTTCGTGGGGATGGTGGAGTTGCGCTTGATTAATACAG- 365707 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 517556 |||| | || ||||| || || || || | ||| || |||| || || | | | | Sbjct 365708 TCATGACTCCCCCTGCAGTCTCCAACCCTAAAGACAGGGGAGCCACGTCCAACAAAAGCA 365767 Query 517557 TATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616 | || | |||||| | | || | | ||| ||||| |||| ||||| |||| Sbjct 365768 GGTCCTGTACCTTTTCAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCAT 365827 Query 517617 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-T 517675 | ||||| || ||||| || || | | | || || | |||||| || | | | Sbjct 365828 AGGCAACTGCCTCATCGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCT 365887 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 | || | | | |||||||| || || | || || || ||||| ||||| ||||| Sbjct 365888 GCAACAGCCTCTGA-ACCTTAGGGATTCGCGTAGAGCCCCCTACTAAGACAATGTCATGG 365946 Query 517736 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT 517795 | | | |||||||| || | |||| | | | || || || || || || | Sbjct 365947 ATTTTAGCTTTATCCATCTTGGCATCCCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCC 366006 Query 517796 CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-T 517853 ||||||| ||||| ||| | ||||| || ||||| || || || | || || | Sbjct 366007 CTAAACAGGTCTGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGT 366064 Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 517913 |||| ||||| | | || |||| ||| | | | || || ||| || || | | Sbjct 366065 CAATGCCTTCATAAAGTGAGTCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCC 366124 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTC 517969 || || | ||| || || || | | | | | || |||| | ||| |||| Sbjct 366125 TCTTGGCCCTTTCGCAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG- 366183 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 || | |||| ||| |||||||| ||||| ||| | | ||||| | || ||| Sbjct 366184 ---TCCTTCTTATGTTTCCTCTTGAACTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCA 366240 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 ||||| || || ||||| | || | || | || || | || | |||| ||||| Sbjct 366241 AAATCCTCTCCACCCAAGTGGGTGTCCCCAGCTGTGGCCTTAACCTCAAAAATCCCATCA 366300 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-T 518148 || | | || | | |||||| || || ||||||| |||||| || | |||| | Sbjct 366301 TCTATGGTCAGGACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGT 366360 Query 518149 CATT-TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 | | || || | || ||| | | ||| ||||| |||| ||||||||||| ||||||| Sbjct 366361 CGCTCTCCCTGACCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCAT 366418 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267 | |||||||| | ||||| ||||| || || || ||||| || ||||| || | || Sbjct 366419 TGATAATTCTTAGCACATTGAGACCTGCGATAACACCCGCATCCTTGGTGGCCTGGCGTT 366478 Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATAT 518327 | || || || || || || || ||||| || || |||| || || | || | | Sbjct 366479 GAGAGTCATTGAAGTAGGCTGGCACAGTGATCACAGCATTGGTGACAGTGTAGCCCAAAA 366538 Query 518328 AAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAAT 518387 |||| || || | ||||| ||| ||| | ||| || || |||| ||| || || Sbjct 366539 AAGCCTCAGCAGTCTCCTTCATCTTAGTTAGTACCATAGAAGAGATTTCTTCAGGATAAA 366598 Query 518388 A---TTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 518444 | || ||| ||| || ||| || || | | || || || |||| | Sbjct 366599 AAGCTTTCTT---TTCCCCTTTATAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGA 366655 Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 | |||| || ||||| ||||||||||||||| || | |||||||| | ||| | Sbjct 366656 TTACTTGGAAAGGCCAAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGC 366715 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 | || | ||||| |||||||| | ||| || ||||| || || | || | |||| Sbjct 366716 CTATCAGACGTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGG 366775 Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 ||||||| || || || | || || || || || | || || || || ||||| | Sbjct 366776 CTGCATCGCCGATGAGCCGCTCAGTATCAGTGAAGGCCACGTAGCTGGGGGTGGTGCGGT 366835 Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 | || || || || || || || || || || || | ||| | || || ||||| Sbjct 366836 TGCCCTGGTCGTTGGCGATGATCTCCACCTTGCCGTGTTGGAACACCCCCACACA 366890 >seq906 Length=1012845 Score = 147 bits (162), Expect = 2e-29 Identities = 373/559 (67%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 517602 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 517661 || || | ||||||||||||||||| |||||||| || | | | ||| |||| ||| | Sbjct 418085 GATTACCTGCACCATATGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTCC 418026 Query 517662 CATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACT 517720 | ||||| || | ||||||| ||| | ||| || ||||| | ||| || ||||| Sbjct 418025 CGTTGAAGAAGTCCTGGAGAAGTT-TCTGAATCTTGGGGATACGGGTTGAGCCACCAACC 417967 Query 517721 AATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACG 517780 || ||||| ||||| | ||| || || |||||||| | |||| | |||| || || Sbjct 417966 AAGACAATATCATGAATCTGAGACTTGTCCAGTTTGGCATCCCTAAGGGCTTTCTCCACA 417907 Query 517781 GGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGA 517840 || || || | | |||||||| | | | |||||| ||| || | |||| | Sbjct 417906 GGGTCCAGGGTGCCACGGAACAAGTCAGCATTCAATTCTTCAAATCGGGCACGGGTAATA 417847 Query 517841 GTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAA 517900 | | || | || |||||||| | | ||||||| ||||| | | || || Sbjct 417846 GAGGTATAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGGCCTGGGTGCTG 417787 Query 517901 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTG 517958 ||||| || | || |||||||| ||||| || || | || | || | || || ||| Sbjct 417786 GAAGAGAGAGTGCGCTTAGCACGCTCACAAGCAGTACGGAGGCGACGGACAGCCCTCTTG 417727 Query 517959 CTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTAC 518016 | || | | | ||| | || | ||| | |||||| ||| ||| | | ||| | || Sbjct 417726 TT--TTCACTGATATCCTTCTTGTGTTTACGCTTGAACTCTGCAATAAA--ATGGTTAAC 417671 Query 518017 AAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTG 518076 | || || ||||| ||||| || ||||| | |||| ||| | |||| | | || | Sbjct 417670 CATGCGGTTGTCAAAGTCTTCTCCACCCAAGTGGGTATCTCCAGCTGTAGATTTGACCTC 417611 Query 518077 GAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAA 518136 || | |||||| |||| || | | | |||||| || |||||||| | |||||| Sbjct 417610 AAAGATTCCATCCTCAATAGTGAGGATTGACACATCAAAAGTGCCACCACCTAAATCAAA 417551 Query 518137 AATAAGTACATTCATTTCT 518155 || || ||||| ||||| Sbjct 417550 GATCAGCACATTTCTTTCT 417532 Score = 102 bits (112), Expect = 6e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| | || Sbjct 417439 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGAAGTACG 417380 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || |||||||| Sbjct 417379 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAATAG 417320 Query 518285 GCAGGAACAGT 518295 ||||| || || Sbjct 417319 GCAGGTACTGT 417309 >seq1033 Length=2538769 Score = 132 bits (146), Expect = 4e-25 Identities = 354/537 (66%), Gaps = 3/537 (1%) Strand=Plus/Minus Query 518120 CCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCA 518179 |||||||| | |||||| || || ||||| | ||| | |||| || | ||| Sbjct 1306764 CCACCACCTAAATCAAAGATCAGCACATTTCTCTCTGCTCCAACCCTTTTGTCCAAGCCA 1306705 Query 518180 TACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATT 518239 || |||| ||||||||||||||||||| | || |||| | |||| |||||||||| Sbjct 1306704 TAGGCAATAGCAGCAGCAGTTGGTTCACTGATGGTTCTAAGTACATGGAGACCAGCAACA 1306645 Query 518240 CTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATA 518299 ||| |||||||| || || || | || || || ||||| || ||||| | || | | Sbjct 1306644 GTTCTAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAGGCAGGCGCTGTGACA 1306585 Query 518300 ACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAA 518359 || || | || || || |||| | | ||| ||| |||| | || | | Sbjct 1306584 ACAGCGTTGGTGACAGTCTTCCCAAGGCAGACTTCTGCAATTTCTTTCCTCTTTGTCAGG 1306525 Query 518360 ATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCA 518419 | ||| |||| || | ||||| || | ||| | || | ||| ||||| | Sbjct 1306524 ACCATGGATGGCATCTCCTCTGGATAAAAACTCTTTGTCTCTCCCTTGTATTCTACTTAA 1306465 Query 518420 AAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGA 518479 | | ||| | | || |||| || | || ||||| | ||||||| | || || Sbjct 1306464 ACCTTAGGTCTGCCAGCATCATTTGCCACCATGAAGGGCCAATGTTTCATAACAGACTGG 1306405 Query 518480 ACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTT 518539 ||| |||| ||| || ||||| | | |||| |||||||||| || ||||| Sbjct 1306404 ACAACAGCATCATCAAATCTTCATCCAATAAGTTGTTTGGCATCAAAAACCGTGTTGGTG 1306345 Query 518540 GGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCT-GTCTCTGTAAA 518598 ||||| ||||| |||| | || || ||||| ||||||| || ||| || | ||||| Sbjct 1306344 GGATTCATTGCGACTTGGTTCTTTGCAGCATCACCAATCA-ATCGTCTGGTGTTAGTAAA 1306286 Query 518599 TGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTT 518655 | ||||| ||| || || | | | || |||||||| ||||| ||||| || || Sbjct 1306285 GGTGACATAGCTTGGGGTGGTTC-AGTCCCCTGATCATTGGCAATTATTTCCACCTT 1306230 >seq1122 Length=2373879 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| | Sbjct 2065656 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 2065597 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | ||||| |||||||| |||||||||||| | | |||||| | Sbjct 2065596 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 2065537 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 2065536 GAAGCTTCTCATAAA 2065522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778778317273552