Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2972 86.0 7e-12 seq2007 86.0 7e-12 seq11 84.2 3e-11 >seq2972 Length=388121 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||| ||||||||||||||| |||||||| || || ||| |||||||| Sbjct 374563 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCAT 374504 Query 117045 AAAGTCAAATGGATT 117059 ||||||||||||||| Sbjct 374503 AAAGTCAAATGGATT 374489 >seq2007 Length=1314160 Score = 86.0 bits (94), Expect = 7e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||||||||||| || | ||||| || ||||| ||||| | | |||| | Sbjct 838860 GCATCAATCTCATCAACAAACAAGATACAGGGAGCATTTTTCCGGGCCACTGCAAACATG 838801 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || |||||| | ||| ||||||||||||||||||| || | | | ||| Sbjct 838800 TCATGAACCCAAGCTGGGCCAACACCAACAAACATCTCCAGGAACTCAG-ACCCATTCAT 838742 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | ||||||||| | | || || ||| | || || || |||||| ||||| || || Sbjct 838741 GGTGATGAAGGGCATACCAGCCTCCCCCACGATTGCCTTGGGGAGAAGCGTCTTGCCAGT 838682 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 ||| || ||| | ||| |||| ||| |||||| ||||| ||| Sbjct 838681 ACCAGGAGGACCTGTGAGCAGGGGTCCCTTTGGAATTTTGGCCCCA 838636 >seq11 Length=524769 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||||| |||||||| |||| |||| | || || || || Sbjct 418847 CTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCC 418788 Query 106552 CAAATTCTTTTGGTTACTCTTT-TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCC 106610 ||| |||| ||||| ||||| || || || | ||| ||||||||||| || || || | Sbjct 418787 CAAGTTCTGCTGGTTGCTCTTCCTTTTTACAGGAATCTTTGTAGAGCATATACGGGGTAC 418728 Query 106611 CCGTCTCCGTCTGTGACT 106628 | ||||| ||||| |||| Sbjct 418727 CTGTCTCTGTCTGAGACT 418710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589677018886080