Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2972 120 3e-22 seq1286 116 4e-21 seq11 111 2e-19 >seq2972 Length=388121 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| ||||| || | |||||||||||||||| ||| | Sbjct 372785 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 372726 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 372725 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 372666 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 372665 CTACCACACGTTCTCC 372650 Score = 105 bits (116), Expect = 8e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || || ||||||| | ||| ||||||||| | || || ||| |||||||| Sbjct 374626 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTG--TCGGACTTGACATCACTCCCATC 374569 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || ||||| | ||| ||| | Sbjct 374568 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTT 374509 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 374508 TCCATAAAGTCAAATGGATTTTCTAC 374483 >seq1286 Length=2059838 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||||| ||||| || | |||||||| ||||||||||| ||| Sbjct 1564877 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1564818 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 1564817 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGCC 1564758 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 1564757 ACCACCCTTTCCCC 1564744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||||||||| || || |||| Sbjct 1575374 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCCTCTAAGGAAATGTTTTCC 1575315 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||| ||||| ||||||| Sbjct 1575314 ATAAAGTCAAAGGGATTTT 1575296 >seq11 Length=524769 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 426759 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 426700 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| || || ||||||||||| || |||||||| | |||| | ||| || Sbjct 426699 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 426640 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 426639 TTTCTTACACCATA 426626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561819370178880