Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2008 176 4e-38 seq1033 156 3e-32 seq906 125 6e-23 seq626 100 2e-15 seq1484 89.7 4e-12 seq812 87.8 1e-11 >seq2008 Length=369338 Score = 176 bits (194), Expect = 4e-38 Identities = 379/557 (68%), Gaps = 20/557 (4%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| || || || | || ||||| || ||||| || || | ||| | || || Sbjct 366924 AGCTATCGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAACACGGCAA 366865 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || || ||||| || || || ||| | || || || || || | ||||| Sbjct 366864 GGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCCTTCAC 366805 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167 || ||||| | | | || |||||||| || | || ||||| || ||||| Sbjct 366804 TGATACTGAGCGGCTCATCGGCGATGCAGCCAAGAACCAGGTAGCCA-TG--AATCCCCA 366748 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 || ||| | |||||||| |||||| | || || |||| ||||||||| | || || Sbjct 366747 GAACACTGTCTTTGATGCCAAACGTCTGATAGGCAGAAAATTTAATGATCCTGTCGTGCA 366688 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATT 550285 |||||||||| | ||||||||||||| | | |||| || || || | || | Sbjct 366687 ATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAAT 366628 Query 550286 GAAGCTACTCATGAAGGATCTGTTAAACAA----TTTTCACCAGAACAAATTTCATCTAT 550341 | | | || || |||| | ||| || |||| || ||| |||| || ||||| Sbjct 366627 GGTG-TCCT-ATAAAGG----GGAAAAGAAAGCTTTTTATCCTGAAGAAATCTCTTCTAT 366574 Query 550342 GGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATG 550400 ||| ||| || ||||| | || || |||||| |||| | | | || || ||| Sbjct 366573 GGTACTAACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACCAATG 366515 Query 550401 CAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTG 550460 | || || ||||| ||||| || || |||||||| ||||| || || || || ||||| | Sbjct 366514 CTGTGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCGG 366455 Query 550461 GACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTG 550520 | ||| || || || ||||| || | |||||||||||||| ||||||||||| ||| Sbjct 366454 GTGTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCATTG 366395 Query 550521 CATATGGACTTGATAAA 550537 | ||||| | |||||| Sbjct 366394 CCTATGGCTTAGATAAA 366378 >seq1033 Length=2538769 Score = 156 bits (172), Expect = 3e-32 Identities = 331/486 (68%), Gaps = 6/486 (1%) Strand=Plus/Plus Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 || || ||||| ||||||||||||| ||| || |||| || ||| ||||| | || Sbjct 1306230 AAGGTGGAAATAATTGCCAATGATC-AGGGGACTGAACCACCCCAAGCTATGTCACCTTT 1306288 Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168 || | || || || |||||||||| ||||| | |||| | | ||||| ||| Sbjct 1306289 ACTAACACCAGACGATTGATTGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCCACC 1306348 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || |||||||||| |||| | |||||| |||| ||| ||||| | ||| ||| Sbjct 1306349 AACACGGTTTTTGATGCCAAACAACTTATTGGATGAAGATTTGATGATGCTGTTGTCCAG 1306408 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | | |||||| |||||||| ||| | | |||| | |||| | |||| | || || Sbjct 1306409 TCTGTTATGAAACATTGGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTAAGGTTTAA 1306468 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTT 550347 | || |||| | ||| | |||| | ||||| | || |||| ||||| | Sbjct 1306469 G-TAGAATACAAGGGAGAGACAAAGAGTTTTTATCCAGAGGAGATGCCATCCATGGTCCT 1306527 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAA 550406 | || | |||| ||| | ||| | | | | |||| || || | || || Sbjct 1306528 GACAAAGAGGAAAGAAATTG-CAGAAGTCTGCCTTGGGAAGACTGTCACCAACGCTGTTG 1306586 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || | || || || ||||||||||| || ||||| ||||| ||||||||| || | Sbjct 1306587 TCACAGCGCCTGCCTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTAGAACTG 1306646 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 ||||||| || |||| ||| | | |||| |||||| ||||||||||| |||| |||| Sbjct 1306647 TTGCTGGTCTCCATGTACTTAGAACCATCAGTGAACCAACTGCTGCTGCTATTGCCTATG 1306706 Query 550527 GACTTG 550532 | |||| Sbjct 1306707 G-CTTG 1306711 >seq906 Length=1012845 Score = 125 bits (138), Expect = 6e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || ||||| || |||||||||||||| || ||||| ||||| Sbjct 417291 GTTACCAACGCTGTCGTCACAGTACCTGCCTATTTTAATGACTCTCAGCGTCAGGCTACC 417350 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || || || ||||| || |||||||| || |||||| Sbjct 417351 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCT 417410 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 417411 GCTGCTATTGCCTATGG 417427 Score = 102 bits (112), Expect = 7e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| |||||| ||||| | || | || || || ||| Sbjct 416457 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCACGGAAAGGTGGAA 416516 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||| | || || || || Sbjct 416517 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACC 416576 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| ||| | |||||||||||||| | |||| | | ||||| ||||| || || Sbjct 416577 GAACGGTTAATCGGTGATGCAGCAAAGAACCAAGTCGCAATGAATCCCACCAACACGGTT 416636 Query 550178 TTTG 550181 |||| Sbjct 416637 TTTG 416640 >seq626 Length=3061481 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || || Sbjct 1018720 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 1018779 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||||| ||||| | | || |||||||| || Sbjct 1018780 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 1018832 >seq1484 Length=2418587 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| || ||||| |||| | ||| | | ||||| Sbjct 499502 ACTAGATGAAGAGTCGACTCCTTTTGC--ATGTTGTAGTCAGACAAAGTACATCCATCTT 499559 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || ||||| || ||||||||||| ||||||||||||||||| ||||| | Sbjct 499560 CCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 499619 Query 563384 GAATTTT 563390 | || || Sbjct 499620 GGATCTT 499626 >seq812 Length=3055148 Score = 87.8 bits (96), Expect = 1e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | ||||| Sbjct 659705 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTATGTCCATCTT 659762 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 ||||| || || ||||| || ||||||||||| ||||||||||||| ||| |||| | Sbjct 659763 TCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCCTTATTCT 659822 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || |||||||| | | | |||||||| | | | Sbjct 659823 GGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTGATGATGT 659882 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | ||||| || |||||||| ||||| Sbjct 659883 TCCCTATTAGAGTCTTCACGAAAATCTGCAT 659913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027117581264080