Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1234 127 2e-24 seq1152 102 7e-17 seq2081 87.8 1e-12 >seq1234 Length=3407371 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29875 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 29934 |||| ||| || |||||||| ||||| || | ||||||||| ||||| ||||| || || Sbjct 3269129 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCC 3269070 Query 29935 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994 || |||||||||||||||| |||||| | ||| || || | ||| || | |||||| Sbjct 3269069 AGGCCCATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATTCACCACGTAG 3269010 Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| || | || |||||| || || || |||||||| Sbjct 3269009 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAG 3268972 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || ||||||||||||||||| || || || || || | || Sbjct 3266778 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC 3266719 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || | |||| ||||||| ||||| ||||||| ||| || ||||| || Sbjct 3266718 CCCTTCAGCTCTGTCGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATC 3266659 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||| || || || ||||| ||||| || || | ||| ||||| || Sbjct 3266658 CCAAATTTTCACTCCCTTGGAAGAGAGTTCCTTAGCGTTGGTGGATCC 3266611 >seq1152 Length=488220 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 270955 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 271014 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||| ||| |||||||| || Sbjct 271015 TAAAGGTCAATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCACATT 271074 Query 112200 CTGCTTGCCTCTGACTGAAGA 112220 ||| || ||| |||||||| Sbjct 271075 CTGTTTACCTTCTACTGAAGA 271095 >seq2081 Length=3848183 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 3217939 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 3217998 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 3217999 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 3218046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408412462727816