Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq271 82.4 2e-11 >seq271 Length=1806658 Score = 82.4 bits (90), Expect = 2e-11 Identities = 186/274 (68%), Gaps = 17/274 (6%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| | |||||| | || || || || || | | | Sbjct 31125 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAGAACCCTTCA 31184 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| ||||| ||||||||||| | | Sbjct 31185 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGGAATGTTGGTGTTGTCCTGT 31244 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | || ||| | |||| | | | | ||||| ||| | ||| Sbjct 31245 TTAATTTTGGCAAAGAGAAGTTT--GAAGTCAAAA---GTTTGAATTGCACAGCTCATTC 31299 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191 ||| || || | |||| | ||| |||||| ||| ||| ||||| || | | Sbjct 31300 GTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGACACTG 31353 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225 |||||||||| ||| ||||| || || ||||| Sbjct 31354 AAAGGGGTTCAAGAGGCTTTGGTTCCACTGGAAG 31387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138613763201952